RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SLITRK5O94991 958 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 LRATO95237 230 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 PRKAG1P54619 331 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 PGM5Q15124 567 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 C16orf58Q96GQ5 468 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 EXOC2Q96KP1 924 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 AARSD1Q9BTE6 412 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 CEP41Q9BYV8 373 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ADAMTS10Q9H324 1103 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 NDUFAF4Q9P032 175 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KLK14Q9P0G3 267 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KCNN3Q9UGI6 736 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 PTCH2Q9Y6C5 1203 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ZFC3H1O60293 1989 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 MYO7AQ13402 2215 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KLHL33A6NCF5 533 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 LYPLA1O75608 230 aaPredicted RBP14.08□□□□□ -0.15
COL7A1-201ENST00000328333 RARRES1P49788 294 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 PCDHB16Q9NRJ7 776 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 HSPB11Q9Y547 144 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 BORCS7-ASMTA0A0B4J1R7 106 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 SSR2P43308 183 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 DLG2Q15700 870 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF773Q6PK81 442 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 DCDC5Q6ZRR9 648 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 TSPAN33Q86UF1 283 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 OR2L8Q8NGY9 312 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 FNDC8Q8TC99 324 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 KXD1Q9BQD3 176 aa14.08□□□□□ -0.15
COL7A1-201ENST00000328333 POLR2J2Q9GZM3 115 aaKnown RBP14.08□□□□□ -0.15
COL7A1-201ENST00000328333 RYKP34925 604 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 GMPSP49915 693 aaPredicted RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 LDLRAP1Q5SW96 308 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DNM1P34Q6PK57 102 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 PHYKPLQ8IUZ5 450 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DEFB106AQ8N104 65 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 METTL25Q8N6Q8 603 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DNASE1L2Q92874 299 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 GIMAP5Q96F15 307 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 FAXDC2Q96IV6 333 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 MECRQ9BV79 373 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 RIOK2Q9BVS4 552 aaKnown RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 ADAMTS13Q76LX8 1427 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 A0A1B0GVM2 712 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 TCAF2A6NFQ2 919 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 AP2A1O95782 977 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 RGS19P49795 217 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 CBX2Q14781 532 aaPredicted RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 TOMM20Q15388 145 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 PBDC1Q9BVG4 233 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DUSP16Q9BY84 665 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 C11orf16Q9NQ32 467 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 TRAV19A0A0A6YYK7 116 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 C1QTNF3-AMACRE9PGA6 284 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 H0YAE9 185 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 CXCR6O00574 342 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 PDYNP01213 254 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 UGT2B10P36537 528 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 CPSF6Q16630 551 aaKnown RBP eCLIP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 GK5Q6ZS86 529 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 MFSD14AQ96MC6 490 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 LPIN3Q9BQK8 851 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF717Q9BY31 904 aaPredicted RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 SNTG1Q9NSN8 517 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 RIC1Q4ADV7 1423 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DFNA5O60443 496 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 CACNG1Q06432 222 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 RABL3Q5HYI8 236 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 FIP1L1Q6UN15 594 aaKnown RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 FAM208AQ9UK61 1670 aaKnown RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 KELP23276 732 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 IFI44LQ53G44 452 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 PITRM1Q5JRX3 1037 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DCLRE1AQ6PJP8 1040 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 SPATA22Q8NHS9 363 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 MAT2BQ9NZL9 334 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 TNFSF13BQ9Y275 285 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 MYOM1P52179 1685 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 DCLK1O15075 740 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 RPP40O75818 363 aaKnown RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 CXorf40AQ8TE69 158 aa14.08□□□□□ -0.16
COL7A1-201ENST00000328333 POLR2J3Q9H1A7 115 aaKnown RBP14.08□□□□□ -0.16
COL7A1-201ENST00000328333 C2orf71A6NGG8 1288 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 M0R129 80 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 POMCP01189 267 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 UBA1P22314 1058 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 SMSP52788 366 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CD83Q01151 205 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 LRRN1Q6UXK5 716 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 UTS2BQ765I0 119 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ZDHHC21Q8IVQ6 265 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF709Q8N972 641 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 SEC14L1Q92503 715 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 MRPL45Q9BRJ2 306 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 NDOR1Q9UHB4 597 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 TEX13CA0A0J9YWL9 993 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 CCR10P46092 362 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ATXN1P54253 815 aaKnown RBP14.07□□□□□ -0.16
COL7A1-201ENST00000328333 PTGR1Q14914 329 aa14.07□□□□□ -0.16
COL7A1-201ENST00000328333 ZFP3Q96NJ6 502 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms