RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MS4A10Q96PG2 267 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SLX1AQ9BQ83 275 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SLA2Q9H6Q3 261 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 TRPC7Q9HCX4 862 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 MIOSQ9NXC5 875 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 WWOXQ9NZC7 414 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 STK26Q9P289 416 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 KCNG2Q9UJ96 466 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF711Q9Y462 761 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 HMGXB3Q12766 1538 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 MED1Q15648 1581 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 PRSS51A0A1B0GVH4 220 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 A0A1W2PPI3 338 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 TRBC2A0A5B9 178 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 MED19A0JLT2 244 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 C5orf60A6NFR6 353 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 UBE2CO00762 179 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 CAPN9O14815 690 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 GCNT3O95395 438 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 BAG4O95429 457 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 KRT19P08727 400 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 HOXB6P17509 224 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 ITGB6P18564 788 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 EEF1DP29692 281 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 CCR3P51677 355 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 HSPA2P54652 639 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 DVL1P1P54792 670 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 ALCAMQ13740 583 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 IL11RAQ14626 422 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 KIR2DS3Q14952 304 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 KYNUQ16719 465 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 CRY2Q49AN0 593 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 KRT80Q6KB66 452 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 RPUSD3Q6P087 351 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 TEX38Q6PEX7 206 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 FIGLAQ6QHK4 219 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 LINGO4Q6UY18 593 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 GDPD4Q6W3E5 623 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF852Q6ZMS4 543 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 PIWIL4Q7Z3Z4 852 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 TMEM173Q86WV6 379 aaPredicted RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 GPALPP1Q8IXQ4 340 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 TC2NQ8N9U0 490 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 L3MBTL4Q8NA19 623 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 CCDC191Q8NCU4 936 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 RBM15BQ8NDT2 890 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 OR13A1Q8NGR1 328 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 CFAP61Q8NHU2 1237 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 RABEP2Q9H5N1 569 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 EQTNQ9NQ60 294 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 PIH1D3Q9NQM4 214 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 NPAP1Q9NZP6 1156 aa3.18□□□□□ -1.9
HMGB1-201ENST00000326004 MYH14Q7Z406 1995 aaKnown RBP3.18□□□□□ -1.9
HMGB1-201ENST00000326004 BAZ1BQ9UIG0 1483 aaKnown RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 TEX13DA0A0J9YY54 714 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ANKUB1A6NFN9 424 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 HEPACAM2A8MVW5 462 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 PRR32B1ATL7 298 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 PRSS44E7EML9 344 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 XRCC3O43542 346 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DKC1O60832 514 aaKnown RBP eCLIP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 CTSVO60911 334 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 TRUB2O95900 331 aaKnown RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ATP1A1P05023 1023 aaKnown RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 LINGO3P0C6S8 592 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 MYBL1P10243 752 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 PFKFB1P16118 471 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 PSMC4P43686 418 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 NR2C2P49116 596 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF75DP51815 510 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 CDH13P55290 713 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DLX5P56178 289 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 HSPB3Q12988 150 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 MFAP5Q13361 173 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF718Q3SXZ3 478 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 TCP11X2Q5H9J9 407 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF771Q7L3S4 317 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 CAMKMTQ7Z624 323 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 FAM9BQ8IZU0 186 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 KBTBD3Q8NAB2 608 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DMBX1Q8NFW5 382 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 OR2AJ1Q8NGZ0 328 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ATL1Q8WXF7 558 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DAZLQ92904 295 aaKnown RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 SLAMF9Q96A28 289 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 PGAP3Q96FM1 320 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 CFAP57Q96MR6 1250 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 C17orf77Q96MU5 243 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF830Q96NB3 372 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF583Q96ND8 569 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 BAG1Q99933 345 aaPredicted RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 C16orf70Q9BSU1 422 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 WNT5BQ9H1J7 359 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DPAGT1Q9H3H5 408 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 ANKZF1Q9H8Y5 726 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 APOBEC3GQ9HC16 384 aaKnown RBP3.17□□□□□ -1.9
HMGB1-201ENST00000326004 OLAHQ9NV23 265 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 DONSONQ9NYP3 566 aa3.17□□□□□ -1.9
HMGB1-201ENST00000326004 HAO2Q9NYQ3 351 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms