RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 RIBC2Q9H4K1 309 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PCDH12Q9NPG4 1184 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SACM1LQ9NTJ5 587 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 IRAK2O43187 625 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RGS14O43566 566 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PRPS2P11908 318 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 GNPDA1P46926 289 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ALDH9A1P49189 494 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SEPHS1P49903 392 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MLLT6P55198 1093 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 YBEYP58557 167 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 VBP1P61758 197 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NCS1P62166 190 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 E2F2Q14209 437 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TRIM71Q2Q1W2 868 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 AP5B1Q2VPB7 878 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 APOBEC3FQ8IUX4 373 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ARHGAP12Q8IWW6 846 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TTC29Q8NA56 475 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SERPINB11Q96P15 392 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TMEM246Q9BRR3 403 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 COPS4Q9BT78 406 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SMURF2Q9HAU4 748 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ATP13A1Q9HD20 1204 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 KRT84Q9NSB2 600 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 GIMAP2Q9UG22 337 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PCTPQ9UKL6 214 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PCDHGB3Q9Y5G1 929 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 N6AMT1Q9Y5N5 214 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SERPINF2P08697 491 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ANXA8P13928 327 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RHOQP17081 205 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 HTR3AP46098 478 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 LILRA4P59901 499 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RAPSNQ13702 412 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PON2Q15165 354 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TRIP4Q15650 581 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 LY6KQ17RY6 165 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 COLEC12Q5KU26 742 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CPZQ66K79 652 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CYP20A1Q6UW02 462 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ZNF767PQ75MW2 155 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SLC46A3Q7Z3Q1 461 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 BTLAQ7Z6A9 289 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PLCZ1Q86YW0 608 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ZZZ3Q8IYH5 903 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RPL3LQ92901 407 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RACGAP1Q9H0H5 632 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SIK2Q9H0K1 926 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 REEP1Q9H902 201 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TRMT6Q9UJA5 497 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 STUB1Q9UNE7 303 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 FAM220BPB1ANY3 271 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MAFKO60675 156 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CREG1O75629 220 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RECQL4O94761 1208 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 WDR47O94967 919 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 SLC4A1P02730 911 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 AGXTP21549 392 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RRM2P31350 389 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NR4A2P43354 598 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CLCN4P51793 760 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 IFITM2Q01629 132 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PYCR3Q53H96 274 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 XKR4Q5GH76 650 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RALGPS2Q86X27 583 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RNF130Q86XS8 419 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 GALNT12Q8IXK2 581 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 STK40Q8N2I9 435 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NETO2Q8NC67 525 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 OR4L1Q8NH43 312 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 BRSK1Q8TDC3 778 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CHTF18Q8WVB6 975 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 KCNJ9Q92806 393 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MBOAT4Q96T53 435 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NXF2Q9GZY0 626 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RNF38Q9H0F5 515 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MROH8Q9H579 483 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NIPAL2Q9H841 368 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 C3orf14Q9HBI5 128 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 POLR3BQ9NW08 1133 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 NDRG4Q9ULP0 352 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MAPRE3Q9UPY8 281 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 COL16A1Q07092 1604 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PDE9AO76083 593 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 HLA-DQB2P05538 268 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 DBTP11182 482 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 PPIBP23284 216 aaKnown RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 BDNFP23560 247 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 LMO2P25791 158 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 ATN1P54259 1190 aaPredicted RBP4.7□□□□□ -1.66
PTPN13-201ENST00000316707 RUNDC3AQ59EK9 446 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 MSANTD2Q6P1R3 559 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 AFTPHQ6ULP2 937 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 GDPD3Q7L5L3 318 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 TAC4Q86UU9 113 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 CDYL2Q8N8U2 506 aa4.7□□□□□ -1.66
PTPN13-201ENST00000316707 DENND6BQ8NEG7 585 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms