RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HEBP2Q9Y5Z4 205 aa19.03■□□□□ 0.64
LIME1-201ENST00000309546 BSNQ9UPA5 3926 aa19.03■□□□□ 0.64
LIME1-201ENST00000309546 H7C0S8 307 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 CCNYL3P0C7X3 344 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 POLR2CP19387 275 aaPredicted RBP19.02■□□□□ 0.64
LIME1-201ENST00000309546 NDUFS1P28331 727 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 ACY1Q03154 408 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 CACNG1Q06432 222 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 PRKAA1Q13131 559 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 KMT5CQ86Y97 462 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 OR4E2Q8NGC2 313 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 OR52K1Q8NGK4 314 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 STYXQ8WUJ0 223 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 ZFPM2Q8WW38 1151 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 CDKN2AIPNLQ96HQ2 116 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 FERD3LQ96RJ6 166 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 SOHLH2Q9NX45 425 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 SEMA5BQ9P283 1151 aa19.02■□□□□ 0.64
LIME1-201ENST00000309546 IGLV3-16A0A075B6K0 115 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 TRBV5-4A0A0C4DH59 114 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 C17orf113A0A1B0GUU1 675 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 IFRD1O00458 451 aaPredicted RBP19.01■□□□□ 0.63
LIME1-201ENST00000309546 IFNB1P01574 187 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 PREPP48147 710 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 LMAN1P49257 510 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 KPNA2P52292 529 aaKnown RBP19.01■□□□□ 0.63
LIME1-201ENST00000309546 HSD11B2P80365 405 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 DBN1Q16643 649 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 CCDC38Q502W7 563 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 PWWP2BQ6NUJ5 590 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 ZNF449Q6P9G9 518 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 FBXO38Q6PIJ6 1188 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 LINC00523Q86TU6 105 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 PIANPQ8IYJ0 282 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 RNF10Q8N5U6 811 aaKnown RBP19.01■□□□□ 0.63
LIME1-201ENST00000309546 CLDN19Q8N6F1 224 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 DNAAF3Q8N9W5 541 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 ACVR1CQ8NER5 493 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 LCN9Q8WX39 176 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 PPM1MQ96MI6 270 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 TSGA10Q9BZW7 698 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 FGF21Q9NSA1 209 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 SMARCAL1Q9NZC9 954 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 PCDHB3Q9Y5E6 796 aa19.01■□□□□ 0.63
LIME1-201ENST00000309546 GSAPA4D1B5 854 aa19■□□□□ 0.63
LIME1-201ENST00000309546 GOLGA6L3A6NEY3 463 aa19■□□□□ 0.63
LIME1-201ENST00000309546 OR51F1A6NGY5 319 aa19■□□□□ 0.63
LIME1-201ENST00000309546 E7EVH7 732 aa19■□□□□ 0.63
LIME1-201ENST00000309546 LIASO43766 372 aa19■□□□□ 0.63
LIME1-201ENST00000309546 ZBTB11O95625 1053 aaPredicted RBP19■□□□□ 0.63
LIME1-201ENST00000309546 GAS8O95995 478 aa19■□□□□ 0.63
LIME1-201ENST00000309546 MT-ND3P03897 115 aa19■□□□□ 0.63
LIME1-201ENST00000309546 CDH3P22223 829 aa19■□□□□ 0.63
LIME1-201ENST00000309546 MSNP26038 577 aaKnown RBP19■□□□□ 0.63
LIME1-201ENST00000309546 ERV3-1Q14264 604 aa19■□□□□ 0.63
LIME1-201ENST00000309546 GPR19Q15760 415 aa19■□□□□ 0.63
LIME1-201ENST00000309546 PPP1R21Q6ZMI0 780 aa19■□□□□ 0.63
LIME1-201ENST00000309546 ATG14Q6ZNE5 492 aa19■□□□□ 0.63
LIME1-201ENST00000309546 PTRH1Q86Y79 214 aaKnown RBP19■□□□□ 0.63
LIME1-201ENST00000309546 CT55Q8WUE5 264 aa19■□□□□ 0.63
LIME1-201ENST00000309546 OR52A5Q9H2C5 316 aa19■□□□□ 0.63
LIME1-201ENST00000309546 SRMSQ9H3Y6 488 aa19■□□□□ 0.63
LIME1-201ENST00000309546 LHX9Q9NQ69 397 aa19■□□□□ 0.63
LIME1-201ENST00000309546 PADI1Q9ULC6 663 aa19■□□□□ 0.63
LIME1-201ENST00000309546 BOD1L1Q8NFC6 3051 aa19■□□□□ 0.63
LIME1-201ENST00000309546 KRT86O43790 486 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 NTRK1P04629 796 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 PDHA2P29803 388 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 TUBB4BP68371 445 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 CDH17Q12864 832 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 SNX1Q13596 522 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 DNASE1L3Q13609 305 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 TUBB2AQ13885 445 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 SKIDA1Q1XH10 827 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 TMTC4Q5T4D3 741 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 SLC13A5Q86YT5 568 aaPredicted RBP18.99■□□□□ 0.63
LIME1-201ENST00000309546 TMEM126BQ8IUX1 230 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 D2HGDHQ8N465 521 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 PHC3Q8NDX5 983 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 APOBEC4Q8WW27 367 aaKnown RBP18.99■□□□□ 0.63
LIME1-201ENST00000309546 C1orf54Q8WWF1 131 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 HGH1Q9BTY7 390 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 TUBB2BQ9BVA1 445 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 ETNK1Q9HBU6 452 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 KCND3Q9UK17 655 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 POMT2Q9UKY4 750 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 ZNF148Q9UQR1 794 aa18.99■□□□□ 0.63
LIME1-201ENST00000309546 CDC14CA4D256 554 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 MROH6A6NGR9 719 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 TERTO14746 1132 aaKnown RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 STIP1P31948 543 aaKnown RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 FDFT1P37268 417 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 NSG1P42857 185 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 BRD3Q15059 726 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 OASLQ15646 514 aaKnown RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 PRUNE1Q86TP1 453 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 BPHLQ86WA6 291 aaPredicted RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 OR52E1Q8NGJ3 308 aa18.98■□□□□ 0.63
LIME1-201ENST00000309546 C9orf43Q8TAL5 461 aaPredicted RBP18.98■□□□□ 0.63
LIME1-201ENST00000309546 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms