RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 ATF6P18850 670 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 WASP42768 502 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 CAPN13Q6MZZ7 669 aaPredicted RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 ZNF782Q6ZMW2 699 aaPredicted RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 MREGQ8N565 214 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 TOP6BLQ8N6T0 577 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 NSMCE3Q96MG7 304 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 ACSS3Q9H6R3 686 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 TECPR2O15040 1411 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 MAFO75444 373 aaPredicted RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 AIMP2Q13155 320 aaKnown RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 NKAPLQ5M9Q1 402 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 DUS1LQ6P1R4 473 aaKnown RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 CLIP4Q8N3C7 705 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 MBOAT7Q96N66 472 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 WDR77Q9BQA1 342 aaPredicted RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 OR51V1Q9H2C8 321 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 UCKL1Q9NWZ5 548 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 EIF3KQ9UBQ5 218 aaKnown RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 ZNF221Q9UK13 617 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 FBXW2Q9UKT8 454 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 TCRBV5S4A2TA0A5A2 114 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 A8MU76 341 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 CXCR3P49682 368 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 VPS26BQ4G0F5 336 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 GPR158Q5T848 1215 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 SLC16A9Q7RTY1 509 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 DHDDSQ86SQ9 333 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 CDCA5Q96FF9 252 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 PHPT1Q9NRX4 125 aaPredicted RBP11.92□□□□□ -0.5
PCF11-201ENST00000298281 PDE4DIPQ5VU43 2346 aa11.92□□□□□ -0.5
PCF11-201ENST00000298281 KANTRA0A1W2PQU2 76 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 DPPA5A6NC42 116 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 FAM227AF5H4B4 570 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 COL6A2P12110 1019 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 TSPAN8P19075 237 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 ACVR2AP27037 513 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 TLE2Q04725 743 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SCIMPQ6UWF3 145 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CAND1Q86VP6 1230 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 HDAC7Q8WUI4 952 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 HTRA1Q92743 480 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 EZH1Q92800 747 aaPredicted RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 TUBGCP5Q96RT8 1024 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 IFT80Q9P2H3 777 aaPredicted RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 RCOR3Q9P2K3 495 aaPredicted RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 ZNF225Q9UK10 706 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 E9PCH4 1651 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CYP3A7-CYP3A51PA0A087WV96 503 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SLC22A3O75751 556 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CYP3A7P24462 503 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CRISP1P54107 249 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 FUKQ8N0W3 1084 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 OR10H4Q8NGA5 316 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 ZCCHC10Q8TBK6 192 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 OR10A4Q9H209 315 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 FAM124BQ9H5Z6 455 aaPredicted RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 ICE1Q9Y2F5 2266 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 C2orf72A6NCS6 295 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 LSM1O15116 133 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 DNAJA2O60884 412 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CPNE3O75131 537 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 PDYNP01213 254 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 PLP2Q04941 152 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 DSG2Q14126 1118 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 GARNL3Q5VVW2 1013 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 TCEANCQ8N8B7 351 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SPPL2BQ8TCT7 592 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 UPF1Q92900 1129 aaKnown RBP eCLIP11.91□□□□□ -0.54e-10■□□□□ 9.9
PCF11-201ENST00000298281 CLK4Q9HAZ1 481 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 A0A0G2JPF8 293 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 OR6C6A6NF89 314 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 C5orf60A6NFR6 353 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 HNRNPCL3B7ZW38 293 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 EIF1AYO14602 144 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 SMAD9O15198 467 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 CLDN11O75508 207 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 HNRNPCL4P0DMR1 293 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 S100PP25815 95 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 RPL22P35268 128 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 RAB4BP61018 213 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 PLET1Q6UQ28 207 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CERS6Q6ZMG9 384 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 STRADAQ7RTN6 431 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 RAVER1Q8IY67 606 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 ACO2Q99798 780 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 VWA7Q9Y334 891 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 ASLP04424 464 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 THEGLP0DJG4 465 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 AQP1P29972 269 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SMAD3P84022 425 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 CD47Q08722 323 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CAMK2DQ13557 499 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 VSTM1Q6UX27 236 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 FUCA2Q9BTY2 467 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 RHOJQ9H4E5 214 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CERS4Q9HA82 394 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CYTH4Q9UIA0 394 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 MAGED1Q9Y5V3 778 aaPredicted RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 LRRC72A6NJI9 287 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms