RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PNPT1Q8TCS8 783 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 AIF1LQ9BQI0 150 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 APOBEC3GQ9HC16 384 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MARCH2Q9P0N8 246 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PCDHB12Q9Y5F1 795 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 TBX1O43435 398 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 EIF5AP63241 154 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SLC39A12Q504Y0 691 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 RFWD3Q6PCD5 774 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PCDH19Q8TAB3 1148 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SMG7Q92540 1137 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 OMDQ99983 421 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ADAMDEC1O15204 470 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SLURP2P0DP57 97 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 LHCGRP22888 699 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GDI2P50395 445 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CRTC2Q53ET0 693 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PPP1R15BQ5SWA1 713 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CPSF7Q8N684 471 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 OR10H5Q8NGA6 315 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 DCAKDQ8WVC6 231 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CENPNQ96H22 339 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 FBXL18Q96ME1 805 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 HOPXQ9BPY8 73 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PRMT5O14744 637 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 KCNA5P22460 613 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ATXN1P54253 815 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 RETSATQ6NUM9 610 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 LRRN4Q8WUT4 740 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ELAC1Q9H777 363 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ARHGEF4Q9NR80 690 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GNAO1P09471 354 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 HSD3B2P26439 372 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CD83Q01151 205 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 BRMS1LQ5PSV4 323 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 NOL9Q5SY16 702 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CCNYL2Q5T2Q4 361 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 FAM35AQ86V20 835 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 LINGO1Q96FE5 620 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MCMBPQ9BTE3 642 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SOHLH2Q9NX45 425 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 QSOX1O00391 747 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CD48P09326 243 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 LINGO3P0C6S8 592 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 NR4A1P22736 598 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MPSTP25325 297 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 WDR4P57081 412 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SMARCB1Q12824 385 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 C1orf127Q8N9H9 656 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 DQX1Q8TE96 717 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SNX33Q8WV41 574 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GATAD2BQ8WXI9 593 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 FCGR1BQ92637 280 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PPP1R16AQ96I34 528 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ZYG11BQ9C0D3 744 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MT-ND1P03886 318 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 CES1P23141 567 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 HUNKP57058 714 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 KLHDC10Q6PID8 442 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PIGXQ8TBF5 258 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SETD6Q8TBK2 473 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 BRD9Q9H8M2 597 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SPON1Q9HCB6 807 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ZNHIT2Q9UHR6 403 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PDE10AQ9Y233 779 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PIGRP01833 764 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF14P17017 642 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GSCP56915 257 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SLC35B2Q8TB61 432 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 HDAC2Q92769 488 aaKnown RBP9.74□□□□□ -0.85
COL6A3-201ENST00000295550 IKZF2Q9UKS7 526 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 PHF24Q9UPV7 400 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 FABP12A6NFH5 140 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 SLC2A2P11168 524 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 RHEBQ15382 184 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TOR1BO14657 336 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CYP3A5P20815 502 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 GLUD2P49448 558 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF517Q6ZMY9 492 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 C16orf59Q7L2K0 433 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 AMIGO1Q86WK6 493 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PMM1Q92871 262 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CNOT6Q9ULM6 557 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 POMCP01189 267 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 RPS9P46781 194 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CMTR2Q8IYT2 770 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ATP13A3Q9H7F0 1226 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 EDARQ9UNE0 448 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PCDHGB3Q9Y5G1 929 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 MYO7AQ13402 2215 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 GBE1Q04446 702 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PCDH1Q08174 1060 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 KLF10Q13118 480 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 INTS6LQ5JSJ4 861 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 AADACL4Q5VUY2 407 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ZFP3Q96NJ6 502 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 EBF3Q9H4W6 596 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 M0QX08 132 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PDCD5O14737 125 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 SLC22A1O15245 554 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms