RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ARSIQ5FYB1 569 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TTC23LQ6PF05 361 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SFRP1Q8N474 314 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 ADCY4Q8NFM4 1077 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 FRS2Q8WU20 508 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SORCS1Q8WY21 1168 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 MYLIPQ8WY64 445 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 LRCH3Q96II8 777 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 MRGPRX3Q96LB0 322 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 TRIM54Q9BYV2 358 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 FAM83DQ9H4H8 585 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 CXorf56Q9H5V9 222 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SLC52A3Q9NQ40 469 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 HEBP1Q9NRV9 189 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 RAD18Q9NS91 495 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 SMOXQ9NWM0 555 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 IL36AQ9UHA7 158 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 LEF1Q9UJU2 399 aaPredicted RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 MRPS23Q9Y3D9 190 aaKnown RBP12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 AP4S1Q9Y587 144 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 HCFC2Q9Y5Z7 792 aa12.7□□□□□ -0.38
SPTLC1-201ENST00000262554 PLXNA2O75051 1894 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 NUP210Q8TEM1 1887 aaPredicted RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TSPAN11A1L157 253 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 DYTNA2CJ06 578 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 PABPN1LA6NDY0 278 aaKnown RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 UPK3BL1B0FP48 263 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 CFAP99D6REC4 459 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 UPK3BL2E5RIL1 263 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 FXYD1O00168 92 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 LSM1O15116 133 aaKnown RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 KPNA5O15131 536 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 EEDO75530 441 aaKnown RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 STK16O75716 305 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 C8GP07360 202 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 SRPRAP08240 638 aaKnown RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 ENO2P09104 434 aaPredicted RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 HSD17B1P14061 328 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 EPB42P16452 691 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 WEE1P30291 646 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 GDF5P43026 501 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 RPIAP49247 311 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 CBX2Q14781 532 aaPredicted RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 DHCR24Q15392 516 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 C6orf10Q5SRN2 563 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 DET1Q7L5Y6 550 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TCAIMQ8N3R3 496 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 CELF5Q8N6W0 485 aaKnown RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 GATA6Q92908 595 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TEX37Q96LM6 180 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 PPP3R2Q96LZ3 170 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 BTBD9Q96Q07 612 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 MYCBPQ99417 103 aaPredicted RBP12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 PKP2Q99959 881 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 NTMT1Q9BV86 223 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TRIM15Q9C019 465 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 PCDH12Q9NPG4 1184 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TMPRSS11EQ9UL52 423 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 ALPK3Q96L96 1907 aa12.69□□□□□ -0.38
SPTLC1-201ENST00000262554 TCRBV3S1A0A5B6 114 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 A6NHS1 94 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 SLC28A1O00337 649 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 NME4O00746 187 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 RGS14O43566 566 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 ASLP04424 464 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 RB1P06400 928 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 EBLN1P0CF75 366 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 MPC1LP0DKB6 136 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 ZFP36L2P47974 494 aaKnown RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 DGKGP49619 791 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 CDKL1Q00532 357 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 HSPA14Q0VDF9 509 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 BNIP2Q12982 314 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 PRKG2Q13237 762 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 MED21Q13503 144 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 CAMK1Q14012 370 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 CAPRIN1Q14444 709 aaKnown RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 ABRAXAS2Q15018 415 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 AP5B1Q2VPB7 878 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 PLEKHS1Q5SXH7 462 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 IL23RQ5VWK5 629 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 RNF165Q6ZSG1 346 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 UBE2R2Q712K3 238 aaPredicted RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 HSD11B1LQ7Z5J1 315 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 SLC15A3Q8IY34 581 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 SKA2Q8WVK7 121 aaPredicted RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 SLC39A7Q92504 469 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 ZUFSPQ96AP4 578 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 VPS33AQ96AX1 596 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 DUS3LQ96G46 650 aaKnown RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 LRIG1Q96JA1 1093 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 EFHD1Q9BUP0 239 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 MTIF3Q9H2K0 278 aaKnown RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 PIDD1Q9HB75 910 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 PARVBQ9HBI1 364 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 DUS2Q9NX74 493 aaKnown RBP12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 ARL15Q9NXU5 204 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 TRPS1Q9UHF7 1281 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 FBXO10Q9UK96 956 aa12.68□□□□□ -0.38
SPTLC1-201ENST00000262554 PER2O15055 1255 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms