RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 POMPQ9Y244 141 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 GLTPD2A6NH11 291 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 PRMT3O60678 531 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 RSL1D1O76021 490 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 PCCBP05166 539 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 LMO2P25791 158 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ASPAP45381 313 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 SUZ12Q15022 739 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 FAM174BQ3ZCQ3 159 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 FBXO48Q5FWF7 155 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 UBXN11Q5T124 520 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TTC29Q8NA56 475 aaPredicted RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 SIDT2Q8NBJ9 832 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 LRTOMTQ8WZ04 291 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 HBEGFQ99075 208 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 SLC38A8A6NNN8 435 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 FAM25EA8MYX2 175 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 AIREO43918 545 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 RASGRP1O95267 797 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 MT-ND1P03886 318 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 WASP42768 502 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CCR10P46092 362 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 AKIRIN2Q53H80 203 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.37□□□□□ -0.271e-8■□□□□ 8.3
SF3A1-201ENST00000215793 SLC35B2Q8TB61 432 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 AZIN2Q96A70 460 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 C12orf42Q96LP6 360 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF599Q96NL3 588 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF347Q96SE7 839 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 OSBPL7Q9BZF2 842 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 SIX2Q9NPC8 291 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TRPV5Q9NQA5 729 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CD84Q9UIB8 345 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 NR2E1Q9Y466 385 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TLL2Q9Y6L7 1015 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 K7EPI3 171 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 IRAK2O43187 625 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 REM1O75628 298 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 RAP2AP10114 183 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 SLC1A2P43004 574 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 DGKGP49619 791 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TRMT10BQ6PF06 316 aaKnown RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 CEP68Q76N32 757 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 PIGWQ7Z7B1 504 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TMEM192Q8IY95 271 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 EFHD2Q96C19 240 aaPredicted RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 LMLNQ96KR4 655 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 C8orf48Q96LL4 319 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 MIPEPQ99797 713 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 GPATCH1Q9BRR8 931 aaKnown RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 A0A1W2PQ72 361 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 FAM234BA2RU67 622 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 PRORSD1PA6NEY8 169 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 CCNKO75909 580 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 PEX2P28328 305 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 GDF10P55107 478 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 MINDY4Q4G0A6 757 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 KHDC1Q4VXA5 237 aaKnown RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 SPRYD7Q5W111 196 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TAF8Q7Z7C8 310 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 ANKRD46Q86W74 232 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 DCAKDQ8WVC6 231 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 KBTBD7Q8WVZ9 684 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 RAB11FIP5Q9BXF6 653 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 DNAJB9Q9UBS3 223 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TMEM88BA6NKF7 163 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 LGR5O75473 907 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 RGS20O76081 388 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 FECHP22830 423 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 ERVK-8P63133 956 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 CIR1Q86X95 450 aaPredicted RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 HERVK_113Q902F9 699 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 FCGR1BQ92637 280 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TAPBPLQ9BX59 468 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 CNTN3Q9P232 1028 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TLR6Q9Y2C9 796 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 SLIT3O75094 1523 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 C9JVG2 144 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 AGPSO00116 658 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TP73O15350 636 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 PIGRP01833 764 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 FAM163BP0C2L3 166 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 VARSP26640 1264 aaKnown RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 HSPB3Q12988 150 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 PPIGQ13427 754 aaKnown RBP eCLIP13.36□□□□□ -0.277e-8■□□□□ 9.3
SF3A1-201ENST00000215793 TYSND1Q2T9J0 566 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 SLC30A8Q8IWU4 369 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 MCEMP1Q8IX19 187 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TSEN15Q8WW01 171 aaKnown RBP13.36□□□□□ -0.27
SF3A1-201ENST00000215793 ABCB9Q9NP78 766 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 TAS2R1Q9NYW7 299 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 FNIP2Q9P278 1114 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 SNX7Q9UNH6 387 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 ASB3Q9Y575 518 aa13.36□□□□□ -0.27
SF3A1-201ENST00000215793 A0A0X1KG70 313 aa13.35□□□□□ -0.27
SF3A1-201ENST00000215793 DNM1LO00429 736 aa13.35□□□□□ -0.27
SF3A1-201ENST00000215793 HSD17B2P37059 387 aa13.35□□□□□ -0.27
SF3A1-201ENST00000215793 MASP1P48740 699 aa13.35□□□□□ -0.27
SF3A1-201ENST00000215793 RAB2AP61019 212 aa13.35□□□□□ -0.27
SF3A1-201ENST00000215793 BLMHQ13867 455 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms