RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZNF709Q8N972 641 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf30Q96M34 536 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NDNQ99608 321 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BTBD1Q9H0C5 482 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ATG5Q9H1Y0 275 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KCNH7Q9NS40 1196 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ABHD10Q9NUJ1 306 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SLC39A1Q9NY26 324 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CROTQ9UKG9 612 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IGSF1Q8N6C5 1336 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ATP7BP35670 1465 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IQSEC2Q5JU85 1478 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GABRR3A8MPY1 467 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR6B1O95007 311 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IL1BP01584 269 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRNPP04156 253 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FCER2P06734 321 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MTHFD2P13995 350 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EGR1P18146 543 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LGALS4P56470 323 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RPL11P62913 178 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ENPEPQ07075 957 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SMAD1Q15797 465 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CYP27C1Q4G0S4 372 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 UBE2NLQ5JXB2 153 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RBM48Q5RL73 367 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PARGQ86W56 976 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FADS6Q8N9I5 356 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR2L5Q8NG80 312 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TRMT10AQ8TBZ6 339 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NELL1Q92832 810 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PPP1R10Q96QC0 940 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CDCA3Q99618 268 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RTKNQ9BST9 563 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ROPN1BQ9BZX4 212 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BHLHE41Q9C0J9 482 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ROPN1Q9HAT0 212 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ERVK-5Q9HDB9 667 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C14orf105Q9NVL8 296 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SPATA6Q9NWH7 488 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DNAJB4Q9UDY4 337 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CAMK2AQ9UQM7 478 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RPL36Q9Y3U8 105 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ATG4BQ9Y4P1 393 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HEY1Q9Y5J3 304 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 AP4B1Q9Y6B7 739 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ADCY9O60503 1353 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OTOL1A6NHN0 477 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DUXAA6NLW8 204 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CIAO1O76071 339 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EPCAMP16422 314 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 S100PP25815 95 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 YAP1P46937 504 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NME5P56597 212 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GRIK2Q13002 908 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PGS1Q32NB8 556 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LSM12Q3MHD2 195 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LCN1P1Q5VSP4 162 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HPS6Q86YV9 775 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EMC1Q8N766 993 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR2AJ1Q8NGZ0 328 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OLIG1Q8TAK6 271 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ACMSDQ8TDX5 336 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NAT14Q8WUY8 206 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 POF1BQ8WVV4 589 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC58Q96CX6 371 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZSWIM3Q96MP5 696 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GPATCH1Q9BRR8 931 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KLQ9UEF7 1012 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TTC34A8MYJ7 566 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 F5H423 210 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TP53I11O14683 189 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TFECO14948 347 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CNTN5O94779 1100 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 APBB3O95704 486 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CSN2P05814 226 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 QDPRP09417 244 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR4E1P0C645 316 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZSCAN5DPP0CG00 497 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NPPBP16860 134 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MYL9P24844 172 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ADSSP30520 456 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EEF1A1P68104 462 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MEF2AQ02078 507 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SPP2Q13103 211 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DGCR6Q14129 220 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EEF1A1P5Q5VTE0 462 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 STOX1Q6ZVD7 989 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ANKMY2Q8IV38 441 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TBC1D21Q8IYX1 336 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C8orf59Q8N0T1 100 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TSPYL6Q8N831 410 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NAT16Q8N8M0 369 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF564Q8TBZ8 553 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DQX1Q8TE96 717 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KAT2AQ92830 837 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PSD2Q9BQI7 771 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ILKAPQ9H0C8 392 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TREM1Q9NP99 234 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RBAKQ9NYW8 714 aaPredicted RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms