RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	FAM45BP	Q6NSW5	357 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	RFLNA	Q6ZTI6	216 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	CYP2U1	Q7Z449	544 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	SERPINA9	Q86WD7	417 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	DSEL	Q8IZU8	1212 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	PELI3	Q8N2H9	469 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	FAM45A	Q8TCE6	357 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	SLC26A7	Q8TE54	656 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	CXorf40A	Q8TE69	158 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	ULK4	Q96C45	1275 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	NXNL1	Q96CM4	212 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	SIPA1	Q96FS4	1042 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	COQ10A	Q96MF6	247 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	NELL2	Q99435	816 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	ZSCAN5A	Q9BUG6	496 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	SPATA16	Q9BXB7	569 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	CCDC68	Q9H2F9	335 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	MEAF6	Q9HAF1	191 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	IGSF5	Q9NSI5	407 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	FBXL12	Q9NXK8	326 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	CD84	Q9UIB8	345 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	PSMD13	Q9UNM6	376 aa		11.53	□□□□□ -0.56
VRK3-223	ENST00000601341	LOC100653049	A0A140TA62	436 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341		A0A1W2PP55	124 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	LZTS3	O60299	673 aa	Predicted RBP	11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	KRT34	O76011	436 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	BAG2	O95816	211 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	LINGO3	P0C6S8	592 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	C7	P10643	843 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF7	P17097	686 aa	Predicted RBP	11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	ACRV1	P26436	265 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	EPHA3	P29320	983 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	GMPR	P36959	345 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	STARD6	P59095	220 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	CRY1	Q16526	586 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	RBM20	Q5T481	1227 aa	Known RBP	11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	HENMT1	Q5T8I9	393 aa	Known RBP	11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	HECTD2	Q5U5R9	776 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	TRIM67	Q6ZTA4	783 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	UBALD2	Q8IYN6	164 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	RBFA	Q8N0V3	343 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF687	Q8N1G0	1237 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	NXPE1	Q8N323	547 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	GANC	Q8TET4	914 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	HEXDC	Q8WVB3	486 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	SCAMP4	Q969E2	229 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	DTD2	Q96FN9	168 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	NDN	Q99608	321 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	RIOK2	Q9BVS4	552 aa	Known RBP	11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	LMAN1L	Q9HAT1	526 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	KCTD5	Q9NXV2	234 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	COMMD10	Q9Y6G5	202 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	BPTF	Q12830	3046 aa		11.52	□□□□□ -0.57
VRK3-223	ENST00000601341	CKAP5	Q14008	2032 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	KANSL1L	A0AUZ9	987 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	KRBA1	A5PL33	1030 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	CHURC1-FNTB	B4DL54	471 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PRMT5	O14744	637 aa	Predicted RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	GPR39	O43194	453 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	OR1I1	O60431	355 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	MMP20	O60882	483 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	RECQL5	O94762	991 aa	Predicted RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PCDH8	O95206	1070 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ESR1	P03372	595 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	CAPNS1	P04632	268 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ACADM	P11310	421 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	C6	P13671	934 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	FMO4	P31512	558 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	NUDT2	P50583	147 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ATP4B	P51164	291 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	CREB5	Q02930	508 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	DLG1	Q12959	904 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	STX5	Q13190	355 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ATP13A5	Q4VNC0	1218 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	OGFRL1	Q5TC84	451 aa	Predicted RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF549	Q6P9A3	640 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	TMEM92	Q6UXU6	159 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ZNF765	Q7L2R6	523 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SNX32	Q86XE0	403 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	HPS6	Q86YV9	775 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	TRAM1L1	Q8N609	369 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	FAM131C	Q96AQ9	280 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	AP2M1	Q96CW1	435 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	L3HYPDH	Q96EM0	354 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	BIRC8	Q96P09	236 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	AARSD1	Q9BTE6	412 aa	Known RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	NUF2	Q9BZD4	464 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ABCG8	Q9H221	673 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	WDR55	Q9H6Y2	383 aa	Predicted RBP	11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	LTB4R2	Q9NPC1	389 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SMOX	Q9NWM0	555 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	DLGAP2	Q9P1A6	1054 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	NCKAP1	Q9Y2A7	1128 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PCDHB1	Q9Y5F3	818 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	TCRBV21S2A2	A0A5A6	115 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341		H3BNX3	289 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	SDHD	O14521	159 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	ATG13	O75143	517 aa		11.51	□□□□□ -0.57
VRK3-223	ENST00000601341	PKM	P14618	531 aa	Known RBP	11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms