RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	CDKN2AIPNL	Q96HQ2	116 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	ATP6V1G3	Q96LB4	118 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	GFM1	Q96RP9	751 aa	Known RBP	12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	SRPK1	Q96SB4	655 aa	Known RBP	12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	FAM167B	Q9BTA0	163 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	STRADB	Q9C0K7	418 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PPCS	Q9HAB8	311 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	SIRPG	Q9P1W8	387 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	GULP1	Q9UBP9	304 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	NOVA2	Q9UNW9	492 aa	Known RBP	12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PKP3	Q9Y446	797 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	PCDHGA7	Q9Y5G6	932 aa		12.51	□□□□□ -0.41
UPF1-208	ENST00000600012	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	CASC3	O15234	703 aa	Known RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	BPI	P17213	487 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	NFKBIA	P25963	317 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	OAS2	P29728	719 aa	Known RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	MC4R	P32245	332 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	HMGCL	P35914	325 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	GP5	P40197	560 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	HADHA	P40939	763 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	PEX6	Q13608	980 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	ARHGEF7	Q14155	803 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	SEMA3A	Q14563	771 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	AGER	Q15109	404 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	AGBL2	Q5U5Z8	902 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	KIAA1614	Q5VZ46	1190 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	NEPRO	Q6NW34	567 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	ERAP2	Q6P179	960 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	AFTPH	Q6ULP2	937 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	ENPP7	Q6UWV6	458 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	RFLNA	Q6ZTI6	216 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	DPPA4	Q7L190	304 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	RAB11FIP2	Q7L804	512 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	STRA8	Q7Z7C7	330 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	LDB1	Q86U70	411 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	CNTN4	Q8IWV2	1026 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	FBXO39	Q8N4B4	442 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	OR6C4	Q8NGE1	309 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	TSACC	Q96A04	125 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	PGM2	Q96G03	612 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	TMEM74	Q96NL1	305 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	CCNL2	Q96S94	520 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	APOO	Q9BUR5	198 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	FAM96A	Q9H5X1	160 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	MED4	Q9NPJ6	270 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	FBXO6	Q9NRD1	293 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	CATSPERZ	Q9NTU4	200 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	FAM53C	Q9NYF3	392 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	KL	Q9UEF7	1012 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	GPR34	Q9UPC5	381 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	COQ6	Q9Y2Z9	468 aa		12.5	□□□□□ -0.41
UPF1-208	ENST00000600012	PIEZO2	Q9H5I5	2752 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012		H7C0S8	307 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	GPR39	O43194	453 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	RPLP0	P05388	317 aa	Known RBP	12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	SLC5A2	P31639	672 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	CCKBR	P32239	447 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	FOXN2	P32314	431 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	SPAM1	P38567	509 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	STC1	P52823	247 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	INHBC	P55103	352 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	SRP54	P61011	504 aa	Known RBP	12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	XIAP	P98170	497 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	PTS	Q03393	145 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	INPP5A	Q14642	412 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	RASA2	Q15283	850 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	ZRANB3	Q5FWF4	1079 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	FAM151B	Q6UXP7	276 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	RD3	Q7Z3Z2	195 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	HSD11B1L	Q7Z5J1	315 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	B3GNT8	Q7Z7M8	397 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	OR4L1	Q8NH43	312 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	CALML6	Q8TD86	181 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	MZB1	Q8WU39	189 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	TLCD1	Q96CP7	247 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	WDR92	Q96MX6	357 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	RBBP8	Q99708	897 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	CPNE1	Q99829	537 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	TXNDC16	Q9P2K2	825 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	ZNF180	Q9UJW8	692 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	FBXO5	Q9UKT4	447 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	ACSL6	Q9UKU0	697 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	MYO18B	Q8IUG5	2567 aa		12.49	□□□□□ -0.41
UPF1-208	ENST00000600012	IQANK1	A0A1B0GTG1	560 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012		A0A1W2PQM1	296 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	TRIM49D1	C9J1S8	452 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	GAPDHS	O14556	408 aa	Predicted RBP	12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	CD3EAP	O15446	510 aa	Known RBP	12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	TNF	P01375	233 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	PCCB	P05166	539 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	ELFN1	P0C7U0	828 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	ZNF30	P17039	623 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	KRT15	P19012	456 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	GABRB3	P28472	473 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	CA5A	P35218	305 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	UGT1A5	P35504	534 aa		12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	CDKN1C	P49918	316 aa	Predicted RBP	12.48	□□□□□ -0.41
UPF1-208	ENST00000600012	SERPINB9	P50453	376 aa		12.48	□□□□□ -0.41

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