RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PRMT5O14744 637 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 S1PR4O95977 384 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 GSTM1P09488 218 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 MTHFD1P11586 935 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 ALDH4A1P30038 563 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 ELK3P41970 407 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 PREPP48147 710 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 EPHA4P54764 986 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 ADARP55265 1226 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 GSTM4Q03013 218 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 SPIDRQ14159 915 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 GPR18Q14330 331 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 BBS9Q3SYG4 887 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 AARS2Q5JTZ9 985 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 TMEM26Q6ZUK4 368 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 DENND6AQ8IWF6 608 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 NOA1Q8NC60 698 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 LRRC1Q9BTT6 524 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 CARD6Q9BX69 1037 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 SEMA6CQ9H3T2 930 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 RDH14Q9HBH5 336 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 FAM8A1Q9UBU6 413 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 MED16Q9Y2X0 877 aa19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 CFAP20Q9Y6A4 193 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 DSPP15924 2871 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-221ENST00000599833 EPG5Q9HCE0 2579 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 ADAMTS20P59510 1910 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 ANKRD11Q6UB99 2663 aaPredicted RBP19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 TRABD2BA6NFA1 517 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 GPC4O75487 556 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 POLBP06746 335 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 ACADLP28330 430 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 CCKBRP32239 447 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC1A2P43004 574 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 GPLD1P80108 840 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 RPA4Q13156 261 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 RTP5Q14D33 572 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 HIF1AQ16665 826 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 LONRF1Q17RB8 773 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 DNAJC21Q5F1R6 531 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 MRNIPQ6NTE8 343 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 UNC5AQ6ZN44 842 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 VRK3Q8IV63 474 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 SPNS2Q8IVW8 549 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 KRT222Q8N1A0 295 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 MMGT1Q8N4V1 131 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 ART4Q93070 314 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 ATXN7L3BQ96GX2 97 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 TCF12Q99081 682 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC38A3Q99624 504 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 FOXP3Q9BZS1 431 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 KCNK4Q9NYG8 393 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 PDP2Q9P2J9 529 aa19.06■□□□□ 0.64
SHKBP1-221ENST00000599833 QSOX1O00391 747 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 CPNE6O95741 557 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 VIPP01282 170 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 FTH1P02794 183 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 OR56A5P0C7T3 313 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 PAMP19021 973 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 AOAHP28039 575 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 CTBP1Q13363 440 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 GBX1Q14549 363 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 CLPPQ16740 277 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 AMZ1Q400G9 498 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 HP1BP3Q5SSJ5 553 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 ZNF549Q6P9A3 640 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 TRMT10BQ6PF06 316 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 UNQ6494/PRO21346Q6UXR6 183 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 USP53Q70EK8 1073 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 CNTN4Q8IWV2 1026 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 PDIK1LQ8N165 341 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 AVL9Q8NBF6 648 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 SH3KBP1Q96B97 665 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 LRRC39Q96DD0 335 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 NRTNQ99748 197 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 GALPQ9UBC7 116 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 CHMP2BQ9UQN3 213 aa19.05■□□□□ 0.64
SHKBP1-221ENST00000599833 IGHV5-10-1A0A0J9YXX1 117 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 LIN7AO14910 233 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 TTC4O95801 387 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 ITGB6P18564 788 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 GABRB3P28472 473 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 HALP42357 657 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 CD151P48509 253 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC7A5Q01650 507 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 TUBB2AQ13885 445 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 FRG1Q14331 258 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 HSP90AA5PQ58FG0 334 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 SPANXN3Q5MJ09 141 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 ZNF470Q6ECI4 717 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 PDZD3Q86UT5 571 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 LRRC6Q86X45 466 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 RBM12BQ8IXT5 1001 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 KIF18AQ8NI77 898 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 ELMO1Q92556 727 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 LIN37Q96GY3 246 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 C12orf66Q96MD2 445 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 CNTNAP3BQ96NU0 1288 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 TTC1Q99614 292 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms