RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MPP1Q00013 466 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 GUCY2DQ02846 1103 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 AMZ1Q400G9 498 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 AARS2Q5JTZ9 985 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 SPANXN3Q5MJ09 141 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 ZNF470Q6ECI4 717 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 MRNIPQ6NTE8 343 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 C8orf74Q6P047 294 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 SDCCAG8Q86SQ7 713 aaPredicted RBP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 SLC9B2Q86UD5 537 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CTAGE6Q86UF2 777 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CTAGE4Q8IX94 777 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 OTUD6BQ8N6M0 293 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 BBOF1Q8ND07 529 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 PHC3Q8NDX5 983 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 NUDT22Q9BRQ3 303 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 RDH14Q9HBH5 336 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 SLC40A1Q9NP59 571 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 TMEM9Q9P0T7 183 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 ZC3H7BQ9UGR2 993 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 FBXO5Q9UKT4 447 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 ANGPTL2Q9UKU9 493 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 ACSL5Q9ULC5 683 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CLCA2Q9UQC9 943 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 MED16Q9Y2X0 877 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 ASXL3Q9C0F0 2248 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 UBA6A0AVT1 1052 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 NIPSNAP2O75323 286 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 GPC4O75487 556 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 PIAS1O75925 651 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 VIPP01282 170 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 AOAHP28039 575 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 CSF2RBP32927 897 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 ABCG1P45844 678 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 GPR3P46089 330 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 CSE1LP55060 971 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 EIF3BP55884 814 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 CALCOCO2Q13137 446 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 THOC5Q13769 683 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 UBAP2Q5T6F2 1119 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 CNSTQ6PJW8 725 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 TMEM26Q6ZUK4 368 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 KCNMB4Q86W47 210 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 CACTIN-AS1Q8N1I8 211 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 MNS1Q8NEH6 495 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 ELMO1Q92556 727 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 FAM136AQ96C01 138 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 LRRC39Q96DD0 335 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 C12orf66Q96MD2 445 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 TCF12Q99081 682 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 TTC1Q99614 292 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC38A3Q99624 504 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC30A3Q99726 388 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 FOXP3Q9BZS1 431 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 RAB17Q9H0T7 212 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 SEMA6CQ9H3T2 930 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 SYNDIG1Q9H7V2 258 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 EPB41L5Q9HCM4 733 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 SAYSD1Q9NPB0 183 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 MSRB2Q9Y3D2 182 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 NEUROG3Q9Y4Z2 214 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 ENTPD2Q9Y5L3 495 aa13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 COL27A1Q8IZC6 1860 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-217ENST00000598558 D6RAR5 112 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 CSO75390 466 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 TTC4O95801 387 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 FTH1P02794 183 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 TPBGLP0DKB5 382 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 MTHFD1P11586 935 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 SLC2A4P14672 509 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 MPSTP25325 297 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 ACADLP28330 430 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 PPARGP37231 505 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 CARSP49589 748 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 TIAL1Q01085 375 aaKnown RBP eCLIP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 ZFP36L1Q07352 338 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 SQSTM1Q13501 440 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 GPR18Q14330 331 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 ISXQ2M1V0 245 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 TEDDM1Q5T9Z0 273 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 PTRHD1Q6GMV3 140 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 ZBED8Q8IZ13 594 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 GALNT15Q8N3T1 639 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 C2CD4AQ8NCU7 369 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 GATA6Q92908 595 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 CXorf40BQ96DE9 158 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 CERS2Q96G23 380 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 GFM1Q96RP9 751 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 NAT9Q9BTE0 207 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 L2HGDHQ9H9P8 463 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 SMYD2Q9NRG4 433 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 IMP3Q9NV31 184 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 KCNK4Q9NYG8 393 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 MOCS1Q9NZB8 636 aa13.88□□□□□ -0.19
SHKBP1-217ENST00000598558 ARHGEF17Q96PE2 2063 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 KLHL33A6NCF5 533 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 TRABD2BA6NFA1 517 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 AGRPO00253 132 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 QSOX1O00391 747 aa13.87□□□□□ -0.19
SHKBP1-217ENST00000598558 LIN7AO14910 233 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms