RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	RHEBL1	Q8TAI7	183 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	LKAAEAR1	Q8TD35	194 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	SREK1	Q8WXA9	508 aa	Known RBP	15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	ATOH8	Q96SQ7	321 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	ACOX2	Q99424	681 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	EPS15L1	Q9UBC2	864 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	CRLS1	Q9UJA2	301 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	FAF1	Q9UNN5	650 aa	Predicted RBP	15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	CKAP5	Q14008	2032 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	COL4A2	P08572	1712 aa		15.18	■□□□□ 0.02
DDX39A-209	ENST00000589318	IGLV3-16	A0A075B6K0	115 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	KPNA3	O00505	521 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	IPO13	O94829	963 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	MTHFD2	P13995	350 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ALOX15	P16050	662 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	POU3F3	P20264	500 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	PPARG	P37231	505 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	SOX9	P48436	509 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	NUP107	P57740	925 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	B4GALNT1	Q00973	533 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	GSTM4	Q03013	218 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	HTR4	Q13639	388 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	APOF	Q13790	326 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ELAVL3	Q14576	367 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	EGFLAM	Q63HQ2	1017 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	SERPINA13P	Q6UXR4	307 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TRIM67	Q6ZTA4	783 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CLDN19	Q8N6F1	224 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ZNF781	Q8N8C0	355 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	PPP4R1	Q8TF05	950 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	OR8D1	Q8WZ84	308 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	SUSD6	Q92537	303 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	KIAA1191	Q96A73	305 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ARRDC3	Q96B67	414 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	PRR11	Q96HE9	360 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	YIPF2	Q9BWQ6	316 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CLPB	Q9H078	707 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TFB2M	Q9H5Q4	396 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	PKD2L2	Q9NZM6	624 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CD84	Q9UIB8	345 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TRMT6	Q9UJA5	497 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	DTNA	Q9Y4J8	743 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ANHX	E9PGG2	379 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TXNDC9	O14530	226 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	PGM3	O95394	542 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CHRM3	P20309	590 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ITGB7	P26010	798 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	AQP5	P55064	265 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	DCDC1	P59894	354 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	NFKB2	Q00653	900 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TRIP10	Q15642	601 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ARL13A	Q5H913	290 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318		Q6ZVL8	140 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	TREML1	Q86YW5	311 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	NKAP	Q8N5F7	415 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CEP70	Q8NHQ1	597 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	EEF1AKMT1	Q8WVE0	214 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	SCAMP4	Q969E2	229 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	CYP4F12	Q9HCS2	524 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	DDX18	Q9NVP1	670 aa	Known RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ITM2B	Q9Y287	266 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	DHRS7	Q9Y394	339 aa		15.17	■□□□□ 0.02
DDX39A-209	ENST00000589318	ANKRD12	Q6UB98	2062 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	NPHS1	O60500	1241 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	HSPA4L	O95757	839 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	CPOX	P36551	454 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ETV3	P41162	512 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ENPP2	Q13822	863 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	HENMT1	Q5T8I9	393 aa	Known RBP	15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	PGM2L1	Q6PCE3	622 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	LIPI	Q6XZB0	460 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	MACC1	Q6ZN28	852 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	MTSS1L	Q765P7	747 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	PIWIL4	Q7Z3Z4	852 aa	Known RBP	15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	TECPR1	Q7Z6L1	1165 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ALYREF	Q86V81	257 aa	Known RBP	15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	WDR75	Q8IWA0	830 aa	Known RBP	15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	CPNE9	Q8IYJ1	553 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ACTRT2	Q8TDY3	377 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	SLC26A7	Q8TE54	656 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	CCDC126	Q96EE4	140 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	EBF4	Q9BQW3	602 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	CACNA2D2	Q9NY47	1150 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ZDHHC3	Q9NYG2	299 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	SPATA7	Q9P0W8	599 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ARMCX1	Q9P291	453 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	BCAP29	Q9UHQ4	241 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	GNPTG	Q9UJJ9	305 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	ADAMTS6	Q9UKP5	1117 aa		15.16	■□□□□ 0.02
DDX39A-209	ENST00000589318	TMEM247	A6NEH6	219 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318		E5RI56	91 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	CDC7	O00311	574 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	MPST	P25325	297 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PEX2	P28328	305 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	CPA2	P48052	419 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	ATP6V0D1	P61421	351 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	TSN	Q15631	228 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	LRIT3	Q3SXY7	679 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PTRHD1	Q6GMV3	140 aa	Known RBP	15.15	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms