RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 POLBP06746 335 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 DLSTP36957 453 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 CDKN1CP49918 316 aaPredicted RBP20■□□□□ 0.79
SHMT1-209ENST00000582653 ZNF140P52738 457 aaPredicted RBP20■□□□□ 0.79
SHMT1-209ENST00000582653 GDF10P55107 478 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 KLF1Q13351 362 aaPredicted RBP20■□□□□ 0.79
SHMT1-209ENST00000582653 PARP6Q2NL67 630 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 DEFB109BQ30KR1 87 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 LARP7Q4G0J3 582 aaKnown RBP eCLIP20■□□□□ 0.79
SHMT1-209ENST00000582653 C16orf46Q6P387 395 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 KLHL35Q6PF15 583 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 ARHGEF18Q6ZSZ5 1173 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 KLHDC8BQ8IXV7 354 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 SYCE1Q8N0S2 351 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 LILRA3Q8N6C8 439 aaPredicted RBP20■□□□□ 0.79
SHMT1-209ENST00000582653 GALNT6Q8NCL4 622 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 OR2L2Q8NH16 312 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 ZFPM2Q8WW38 1151 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 UBXN4Q92575 508 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 PADI1Q9ULC6 663 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 MYO18BQ8IUG5 2567 aa20■□□□□ 0.79
SHMT1-209ENST00000582653 ZNF106Q9H2Y7 1883 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 IGHV5-51A0A0C4DH38 117 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 MIF4GDA9UHW6 222 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 CCNYL3P0C7X3 344 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 MTHFD1P11586 935 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 PDE1BQ01064 536 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 TLE1Q04724 770 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 PLCL1Q15111 1095 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 BCL7AQ4VC05 210 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 KCTD11Q693B1 232 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 BPHLQ86WA6 291 aaPredicted RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 PPP1R3BQ86XI6 285 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 CFAP206Q8IYR0 622 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 TTC13Q8NBP0 860 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 DCUN1D1Q96GG9 259 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 ABHD17AQ96GS6 310 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 SLC41A2Q96JW4 573 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 DNAJC1Q96KC8 554 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 C12orf66Q96MD2 445 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 FCRL4Q96PJ5 515 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 TMEM121Q9BTD3 319 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 PDE7BQ9NP56 450 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 PIH1D1Q9NWS0 290 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 KCND3Q9UK17 655 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 CROTQ9UKG9 612 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 ACSL5Q9ULC5 683 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 MRPS18BQ9Y676 258 aaKnown RBP19.99■□□□□ 0.79
SHMT1-209ENST00000582653 CAPN6Q9Y6Q1 641 aa19.99■□□□□ 0.79
SHMT1-209ENST00000582653 TLN1Q9Y490 2541 aaKnown RBP19.98■□□□□ 0.79
SHMT1-209ENST00000582653 KLHL33A6NCF5 533 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 RECKO95980 971 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 MT-ND3P03897 115 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 PRSS56P0CW18 603 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 MC4RP32245 332 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 KCNAB1Q14722 419 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 SNX20Q7Z614 316 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 NXPE1Q8N323 547 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 C9orf43Q8TAL5 461 aaPredicted RBP19.98■□□□□ 0.79
SHMT1-209ENST00000582653 SLC35B2Q8TB61 432 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 ULK4Q96C45 1275 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 STAMBPL1Q96FJ0 436 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 LINC00615Q96LM1 132 aaPredicted RBP19.98■□□□□ 0.79
SHMT1-209ENST00000582653 PPP1R2P1Q96PQ5 205 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 IMPACTQ9P2X3 320 aa19.98■□□□□ 0.79
SHMT1-209ENST00000582653 ITGALP20701 1170 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 HADHAP40939 763 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 SEPT6Q14141 434 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 ATP1A1-AS1Q5TC04 95 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 CERS6Q6ZMG9 384 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 KMT5CQ86Y97 462 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 SIDT2Q8NBJ9 832 aaKnown RBP19.97■□□□□ 0.79
SHMT1-209ENST00000582653 ATG4AQ8WYN0 398 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 HES6Q96HZ4 224 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 RMDN2Q96LZ7 410 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 COPS8Q99627 209 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 MAP3K3Q99759 626 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 C19orf43Q9BQ61 176 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 ZNF71Q9NQZ8 489 aaPredicted RBP19.97■□□□□ 0.79
SHMT1-209ENST00000582653 HRASLS2Q9NWW9 162 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 FEZ2Q9UHY8 353 aaPredicted RBP19.97■□□□□ 0.79
SHMT1-209ENST00000582653 ANAPC2Q9UJX6 822 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 PCDHGA6Q9Y5G7 932 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 KCNMB2Q9Y691 235 aa19.97■□□□□ 0.79
SHMT1-209ENST00000582653 ARHGAP6O43182 974 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 SLC35G4P0C7Q5 338 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 RALBP11234 206 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 ATP1B2P14415 290 aaPredicted RBP19.96■□□□□ 0.79
SHMT1-209ENST00000582653 FOLR1P15328 257 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 ACY1Q03154 408 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 ERV3-1Q14264 604 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 GSE1Q14687 1217 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 POU6F1Q14863 301 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 ZRANB3Q5FWF4 1079 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 CAPRIN2Q6IMN6 1127 aaKnown RBP19.96■□□□□ 0.79
SHMT1-209ENST00000582653 LRRC45Q96CN5 670 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 CD180Q99467 661 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 LRRC40Q9H9A6 602 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 LHX9Q9NQ69 397 aa19.96■□□□□ 0.79
SHMT1-209ENST00000582653 SLC24A2Q9UI40 661 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms