RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 GCH1P30793 250 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 SUOXP51687 545 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 EIF5P55010 431 aaKnown RBP5.86□□□□□ -1.47
SS18-214ENST00000580003 CHAF1BQ13112 559 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 FAM205BPQ63HN1 556 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 DENND5BQ6ZUT9 1274 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 FCAMRQ8WWV6 532 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 MTERF3Q96E29 417 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 FAM81BQ96LP2 452 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 SLA2Q9H6Q3 261 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 MBNL1Q9NR56 388 aaKnown RBP5.86□□□□□ -1.47
SS18-214ENST00000580003 OLFML3Q9NRN5 406 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 ADPRHL2Q9NX46 363 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 A0A1W2PQ09 198 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 MED19A0JLT2 244 aaPredicted RBP5.85□□□□□ -1.47
SS18-214ENST00000580003 IGHV4-38-2P0DP08 117 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 VPREB1P12018 145 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 ALOX12P18054 663 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 CBLP22681 906 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 CHRNB4P30926 498 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 HOXD13P35453 343 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 ARSEP51690 589 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 WTAPQ15007 396 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 MAPRE1Q15691 268 aaKnown RBP5.85□□□□□ -1.47
SS18-214ENST00000580003 FSD1Q9BTV5 496 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 BARHL1Q9BZE3 327 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 SLC52A3Q9NQ40 469 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 HACL1Q9UJ83 578 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 C2CD2Q9Y426 696 aa5.85□□□□□ -1.47
SS18-214ENST00000580003 LNP1A1A4G5 178 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 ELOVL7A1L3X0 281 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 ZG16O60844 167 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 TSHBP01222 138 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 THOP1P52888 689 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 ATP12AP54707 1039 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 KRTAP10-6P60371 365 aaPredicted RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 PRKAA1Q13131 559 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 MELKQ14680 651 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 RILPL1Q5EBL4 403 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 ARHGAP11AQ6P4F7 1023 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 CRYBG2Q8N1P7 616 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 OR2T12Q8NG77 320 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 DAZLQ92904 295 aaKnown RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 LGALS12Q96DT0 336 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 CALML4Q96GE6 196 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 RHNO1Q9BSD3 238 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 RBM4Q9BWF3 364 aaKnown RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 MAF1Q9H063 256 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 OSGEPL1Q9H4B0 414 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 PSD3Q9NYI0 1048 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 NPAP1Q9NZP6 1156 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 LARSQ9P2J5 1176 aaKnown RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 ADD3Q9UEY8 706 aaKnown RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 TBC1D29Q9UFV1 150 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 PLAGL1Q9UM63 463 aa5.84□□□□□ -1.47
SS18-214ENST00000580003 SPIN1Q9Y657 262 aaPredicted RBP5.84□□□□□ -1.47
SS18-214ENST00000580003 FLT1P17948 1338 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 OR2A25A4D2G3 310 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 PAPSS1O43252 624 aaPredicted RBP5.83□□□□□ -1.48
SS18-214ENST00000580003 SSX4O60224 188 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 CSPG5O95196 566 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 CSH1P0DML2 217 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 CSH2P0DML3 217 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 ERVK-10P10266 1014 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 HSD17B4P51659 736 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 NR0B1P51843 470 aaKnown RBP5.83□□□□□ -1.48
SS18-214ENST00000580003 PNLIPRP2P54317 469 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 SNX16P57768 344 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 CXCL9Q07325 125 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 TMEM30BQ3MIR4 351 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 TMCO3Q6UWJ1 677 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 HAUS6Q7Z4H7 955 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 PLD3Q8IV08 490 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 TAGAPQ8N103 731 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 WDSUB1Q8N9V3 476 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 POC5Q8NA72 575 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 NSUN4Q96CB9 384 aaKnown RBP5.83□□□□□ -1.48
SS18-214ENST00000580003 KCNK15Q9H427 330 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 COQ3Q9NZJ6 369 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 SLC7A7Q9UM01 511 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 ZNF148Q9UQR1 794 aa5.83□□□□□ -1.48
SS18-214ENST00000580003 RSF1Q96T23 1441 aaPredicted RBP5.82□□□□□ -1.48
SS18-214ENST00000580003 PRSS51A0A1B0GVH4 220 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 OR6C76A6NM76 312 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 PLOD2O00469 737 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 APOHP02749 345 aaPredicted RBP5.82□□□□□ -1.48
SS18-214ENST00000580003 PATE4P0C8F1 98 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 PRSS56P0CW18 603 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 LIFP15018 202 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 SAT1P21673 171 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 HOXC8P31273 242 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 CUL4AQ13619 759 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 KRTAP27-1Q3LI81 207 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 ARHGAP17Q68EM7 881 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 MZT2BQ6NZ67 158 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 AACSQ86V21 672 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 ERLEC1Q96DZ1 483 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 PAFAH2Q99487 392 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 KIFC3Q9BVG8 833 aa5.82□□□□□ -1.48
SS18-214ENST00000580003 TEX12Q9BXU0 123 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms