RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LINC00615Q96LM1 132 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-207ENST00000580002 ATOH8Q96SQ7 321 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 MIR1-1HGQ9H1L0 117 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 ZNF395Q9H8N7 513 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-207ENST00000580002 DMTF1Q9Y222 760 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 UBXN8O00124 270 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 QSOX1O00391 747 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 GNPDA1P46926 289 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 ABRQ12979 859 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 PYCR3Q53H96 274 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 PLEKHS1Q5SXH7 462 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 KLC3Q6P597 504 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 ATG14Q6ZNE5 492 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 OR56A4Q8NGH8 313 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 RABEP2Q9H5N1 569 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 TFB2MQ9H5Q4 396 aaKnown RBP24.62■■□□□ 1.53
SHMT1-207ENST00000580002 AASDHPPTQ9NRN7 309 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 UTP6Q9NYH9 597 aaKnown RBP24.62■■□□□ 1.53
SHMT1-207ENST00000580002 GPSM3Q9Y4H4 160 aa24.62■■□□□ 1.53
SHMT1-207ENST00000580002 WDFY4Q6ZS81 3184 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 PRSS38A1L453 326 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 SLCO2B1O94956 709 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 APOA4P06727 396 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 HOXC4P09017 264 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-207ENST00000580002 ACP5P13686 325 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 MTHFD2P13995 350 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 IL9RQ01113 521 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 TTLL9Q3SXZ7 439 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 ZNF542PQ5EBM4 170 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 LCA5Q86VQ0 697 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 NUDCD3Q8IVD9 361 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 SPDYE1Q8NFV5 336 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-207ENST00000580002 OR2L2Q8NH16 312 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 SKA2Q8WVK7 121 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-207ENST00000580002 ZNF514Q96K75 400 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-207ENST00000580002 TSSK1BQ9BXA7 367 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 COG4Q9H9E3 785 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 KLHL42Q9P2K6 505 aa24.61■■□□□ 1.53
SHMT1-207ENST00000580002 FAM86C2PA6NEL3 165 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 MGAT4DA6NG13 374 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 A6NNZ2 444 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 RBP1P09455 135 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 CD27P26842 260 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 RGS4P49798 205 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 SEC24CP53992 1094 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 ATP6V0D1P61421 351 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 PHKG1Q16816 387 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 SBSNQ6UWP8 590 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 ZYG11AQ6WRX3 759 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 WDR5BQ86VZ2 330 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 MYO1HQ8N1T3 1032 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 ASZ1Q8WWH4 475 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 ZNF75CPQ92670 426 aaPredicted RBP24.6■■□□□ 1.53
SHMT1-207ENST00000580002 SCARF2Q96GP6 870 aaPredicted RBP24.6■■□□□ 1.53
SHMT1-207ENST00000580002 WDR92Q96MX6 357 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 CARS2Q9HA77 564 aaKnown RBP24.6■■□□□ 1.53
SHMT1-207ENST00000580002 KCNK6Q9Y257 313 aa24.6■■□□□ 1.53
SHMT1-207ENST00000580002 NCF1BA6NI72 391 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 NCF1CA8MVU1 366 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 MEI4A8MW99 385 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 THEGLP0DJG4 465 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 FGF3P11487 239 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 NCF1P14598 390 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 TAC1P20366 129 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 SYTL3Q4VX76 610 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 RPS27LQ71UM5 84 aaKnown RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 AMZ2Q86W34 360 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 CFAP61Q8NHU2 1237 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 CCL4L1Q8NHW4 92 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 PHF21BQ96EK2 531 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 TCEAL2Q9H3H9 227 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 KLC4Q9NSK0 619 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 KLF15Q9UIH9 416 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 RNF112Q9ULX5 631 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 PSMD13Q9UNM6 376 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 ANKRD12Q6UB98 2062 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 LRRC14BA6NHZ5 514 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 KMOO15229 486 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 MYL2P10916 166 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 LSP1P33241 339 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 CCR10P46092 362 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 THOP1P52888 689 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 CHI3L2Q15782 390 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 ALG11Q2TAA5 492 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 C18orf21Q32NC0 220 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-207ENST00000580002 SLC36A4Q6YBV0 504 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 C1orf216Q8TAB5 229 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 TMEM159Q96B96 161 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 SIRPGQ9P1W8 387 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 CIDEBQ9UHD4 219 aa24.59■■□□□ 1.53
SHMT1-207ENST00000580002 A0A1W2PR77 199 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 HRO43593 1189 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 CBSLP0DN79 551 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 ARRB2P32121 409 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 CBSP35520 551 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 YPEL5P62699 121 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 PDK4Q16654 411 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 PPP1R3AQ16821 1122 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 MBOAT1Q6ZNC8 495 aa24.58■■□□□ 1.53
SHMT1-207ENST00000580002 GALNT13Q8IUC8 556 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms