RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 AP1M1Q9BXS5 423 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 COG4Q9H9E3 785 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 SSUH2Q9Y2M2 353 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 KIF5CO60282 957 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 AP2A2O94973 939 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 ANKRD34CP0C6C1 535 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 NSG1P42857 185 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 LEPRP48357 1165 aaKnown RBP23.35■■□□□ 1.33
SHMT1-206ENST00000579558 RAB15P59190 212 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 PRAMEP78395 509 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 ACVR1Q04771 509 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 TRIP13Q15645 432 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-206ENST00000579558 OR6P1Q8NGX9 317 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 MAGOHBQ96A72 148 aaKnown RBP23.35■■□□□ 1.33
SHMT1-206ENST00000579558 NAP1L3Q99457 506 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-206ENST00000579558 TTC7AQ9ULT0 858 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-206ENST00000579558 B3GALT1Q9Y5Z6 326 aa23.35■■□□□ 1.33
SHMT1-206ENST00000579558 AHCTF1Q8WYP5 2266 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 AP3B1O00203 1094 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PGRMC1O00264 195 aaKnown RBP23.34■■□□□ 1.33
SHMT1-206ENST00000579558 VPS41P49754 854 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 MC2RQ01718 297 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PCID2Q5JVF3 399 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 DCAF12Q5T6F0 453 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 ARHGAP40Q5TG30 622 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 LYPLAL1Q5VWZ2 237 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 ANKS6Q68DC2 871 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 CAPRIN2Q6IMN6 1127 aaKnown RBP23.34■■□□□ 1.33
SHMT1-206ENST00000579558 IRGCQ6NXR0 463 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 TTC27Q6P3X3 843 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 KLHL35Q6PF15 583 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PACS1Q6VY07 963 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 OR4L1Q8NH43 312 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PEX13Q92968 403 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 ZDHHC12Q96GR4 267 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 CCNL2Q96S94 520 aaPredicted RBP23.34■■□□□ 1.33
SHMT1-206ENST00000579558 OSBPL9Q96SU4 736 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 TTC1Q99614 292 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 ASPSCR1Q9BZE9 553 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PCDHB11Q9Y5F2 797 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PRSS21Q9Y6M0 314 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 PIKFYVEQ9Y2I7 2098 aa23.34■■□□□ 1.33
SHMT1-206ENST00000579558 QSOX1O00391 747 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 RASSF9O75901 435 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 GSTM1P09488 218 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 TPSB2P20231 275 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 TERF1P54274 439 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 CRADDP78560 199 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 CDK16Q00536 496 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 GSTM4Q03013 218 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 VAC14Q08AM6 782 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 KRT33BQ14525 404 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 TPSAB1Q15661 275 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 ZNF658BQ4V348 819 aaPredicted RBP23.33■■□□□ 1.33
SHMT1-206ENST00000579558 ZNF449Q6P9G9 518 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 COG1Q8WTW3 980 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 ZFPM2Q8WW38 1151 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 IL22Q9GZX6 179 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 RAB33BQ9H082 229 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 CHRAC1Q9NRG0 131 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 BFARQ9NZS9 450 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 EPHA6Q9UF33 1036 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 HEBP2Q9Y5Z4 205 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 COLEC10Q9Y6Z7 277 aa23.33■■□□□ 1.33
SHMT1-206ENST00000579558 IQCJ-SCHIP1C9J366 451 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-206ENST00000579558 STMND1H3BQB6 276 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 TOX3O15405 576 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-206ENST00000579558 KRT14P02533 472 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 NPY2RP49146 381 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 SEPHS1P49903 392 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 GPS1Q13098 491 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 FASTKD1Q53R41 847 aaKnown RBP23.32■■□□□ 1.32
SHMT1-206ENST00000579558 CACHD1Q5VU97 1274 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 CERS6Q6ZMG9 384 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 CCDC81Q6ZN84 652 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 FAM92BQ6ZTR7 304 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 ZNF534Q76KX8 674 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 PRSS42Q7Z5A4 293 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 DTX1Q86Y01 620 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 PDLIM2Q96JY6 352 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 TEFMQ96QE5 360 aaKnown RBP23.32■■□□□ 1.32
SHMT1-206ENST00000579558 CTRCQ99895 268 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 OR52A5Q9H2C5 316 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 ZNF768Q9H5H4 540 aaKnown RBP23.32■■□□□ 1.32
SHMT1-206ENST00000579558 KIR3DX1Q9H7L2 352 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 FBXO8Q9NRD0 319 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 SLC24A2Q9UI40 661 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 SDK2Q58EX2 2172 aa23.32■■□□□ 1.32
SHMT1-206ENST00000579558 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-206ENST00000579558 TEX51A0A1B0GUA7 166 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 TCRBV7S3A2A0A539 114 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 IFRD1O00458 451 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-206ENST00000579558 KIF1CO43896 1103 aaKnown RBP23.31■■□□□ 1.32
SHMT1-206ENST00000579558 FTH1P02794 183 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 NDUFS1P28331 727 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 COILP38432 576 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-206ENST00000579558 PREPP48147 710 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 PPP1CAP62136 330 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 RPA4Q13156 261 aa23.31■■□□□ 1.32
SHMT1-206ENST00000579558 CYP1B1Q16678 543 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms