RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 MSS51Q4VC12 460 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 KHDC1Q4VXA5 237 aaKnown RBP13.1□□□□□ -0.31
CCDC40-205ENST00000571028 CLEC18BQ6UXF7 455 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 NLRP9Q7RTR0 991 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 ADGRG6Q86SQ4 1221 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 ANKMY2Q8IV38 441 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 PDIK1LQ8N165 341 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 AGGF1Q8N302 714 aaeCLIP13.1□□□□□ -0.31
CCDC40-205ENST00000571028 IL22RA1Q8N6P7 574 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 CLEC18CQ8NCF0 446 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 OR13J1Q8NGT2 312 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 C9orf43Q8TAL5 461 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-205ENST00000571028 IFT81Q8WYA0 676 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 STAMBPL1Q96FJ0 436 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 CFAP36Q96G28 342 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 COX14Q96I36 57 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 RHOXF2Q9BQY4 288 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 KIFC1Q9BW19 673 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 FRMD8Q9BZ67 464 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-205ENST00000571028 IGSF5Q9NSI5 407 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 GRHL1Q9NZI5 618 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 IL1RAPL1Q9NZN1 696 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 WHRNQ9P202 907 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 ATXN10Q9UBB4 475 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 NFKBIL1Q9UBC1 381 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-205ENST00000571028 SOX13Q9UN79 622 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 CHMP2BQ9UQN3 213 aa13.1□□□□□ -0.31
CCDC40-205ENST00000571028 CDK14O94921 469 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 FUCA1P04066 466 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 CELA2BP08218 269 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 ZNF8P17098 575 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 MSH3P20585 1137 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 ETV5P41161 510 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 ELK3P41970 407 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 CACNG1Q06432 222 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 PDIA2Q13087 525 aaKnown RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 GTF2H3Q13889 308 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 HIF1AQ16665 826 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 MAP9Q49MG5 647 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 TEX35Q5T0J7 233 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 GPRC6AQ5T6X5 926 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 PDPK2PQ6A1A2 396 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 AFTPHQ6ULP2 937 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 SNX20Q7Z614 316 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 LDB1Q86U70 411 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 CCDC25Q86WR0 208 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 DTX1Q86Y01 620 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 CCL4L1Q8NHW4 92 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 DCUN1D1Q96GG9 259 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 SIGLEC10Q96LC7 697 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 CATSPER2Q96P56 530 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 TMEM168Q9H0V1 697 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 TRIM39Q9HCM9 518 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 ZNF71Q9NQZ8 489 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 DMGDHQ9UI17 866 aaKnown RBP13.09□□□□□ -0.31
CCDC40-205ENST00000571028 PLEKHM1Q9Y4G2 1056 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 RPS6KL1Q9Y6S9 549 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 RNF215Q9Y6U7 377 aa13.09□□□□□ -0.31
CCDC40-205ENST00000571028 OR2AG2A6NM03 316 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 C9orf172C9J069 976 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 SMAPO00193 183 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 NDC80O14777 642 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 TNFRSF10CO14798 259 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 PBLDP30039 288 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 TMEM115Q12893 351 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 HLTFQ14527 1009 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 ANKRD20A4Q4UJ75 823 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 FASTKD1Q53R41 847 aaKnown RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 LDLRAP1Q5SW96 308 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 CAPN12Q6ZSI9 719 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 CHST15Q7LFX5 561 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 TAF8Q7Z7C8 310 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 SERPINA9Q86WD7 417 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 GALNT13Q8IUC8 556 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 IGDCC3Q8IVU1 814 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 PIANPQ8IYJ0 282 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 OR4L1Q8NH43 312 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 GPBAR1Q8TDU6 330 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 ULK4Q96C45 1275 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 VPS35Q96QK1 796 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 OR2M4Q96R27 311 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 COPS8Q99627 209 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 SLC12A9Q9BXP2 914 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 MRM3Q9HC36 420 aaKnown RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 SAYSD1Q9NPB0 183 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 TREX1Q9NSU2 369 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 KCNK4Q9NYG8 393 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 FAM8A1Q9UBU6 413 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 PLAAQ9Y263 795 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 SLC17A4Q9Y2C5 497 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 PCYT1BQ9Y5K3 369 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-205ENST00000571028 NOTCH2Q04721 2471 aa13.08□□□□□ -0.32
CCDC40-205ENST00000571028 BSNQ9UPA5 3926 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 SPTAN1Q13813 2472 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 FAM237BA0A1B0GVD1 139 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 MAGEB16A2A368 324 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 H7C0S8 307 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 TP73O15350 636 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms