RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ILKQ13418 452 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 DNTTIP2Q5QJE6 756 aaKnown RBP19.14■□□□□ 0.65
CLN3-225ENST00000566824 CNSTQ6PJW8 725 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 SPRED1Q7Z699 444 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 CCNJLQ8IV13 435 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 VRK3Q8IV63 474 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 NAT6Q93015 286 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 FAM136AQ96C01 138 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 C9orf72Q96LT7 481 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 RHOXF2Q9BQY4 288 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 OR52A5Q9H2C5 316 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 SMYD2Q9NRG4 433 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 KIF26BQ2KJY2 2108 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 KIR2DS5A0A0G2JLQ3 304 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 A0A0G2JNG1 304 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 SLC5A10A0PJK1 596 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 RHPN2P1A8MT19 583 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 KIR2DS3K7RE56 304 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 EIF3HO15372 352 aaKnown RBP eCLIP19.13■□□□□ 0.65
CLN3-225ENST00000566824 FTH1P02794 183 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 XRCC1P18887 633 aaPredicted RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 PPARGP37231 505 aaPredicted RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 HHEXQ03014 270 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 BOP1Q14137 746 aaKnown RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 KIR2DS5Q14953 304 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 NR1D2Q14995 579 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 TEDDM1Q5T9Z0 273 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 NKAIN2Q5VXU1 208 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 PTRHD1Q6GMV3 140 aaKnown RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 CAPRIN2Q6IMN6 1127 aaKnown RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 TMPRSS9Q7Z410 1059 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 C2CD4AQ8NCU7 369 aaPredicted RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 PYROXD1Q8WU10 500 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 JPH3Q8WXH2 748 aaPredicted RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 NRTNQ99748 197 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 FAM167BQ9BTA0 163 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 SARS2Q9NP81 518 aaKnown RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 FAM114A2Q9NRY5 505 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 MOCS1Q9NZB8 636 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 KLK13Q9UKR3 277 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 ACSL5Q9ULC5 683 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 ATXN7L1Q9ULK2 861 aaPredicted RBP19.13■□□□□ 0.65
CLN3-225ENST00000566824 CDYLQ9Y232 598 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 MED16Q9Y2X0 877 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 KNTC1P50748 2209 aa19.13■□□□□ 0.65
CLN3-225ENST00000566824 RPLP0P05388 317 aaKnown RBP19.12■□□□□ 0.65
CLN3-225ENST00000566824 AOAHP28039 575 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 ALDH4A1P30038 563 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 MAGEA4P43358 317 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 HES3Q5TGS1 186 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 CDCP2Q5VXM1 449 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 SLC9B2Q86UD5 537 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 CNTN4Q8IWV2 1026 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 OR6C4Q8NGE1 309 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 SLC30A3Q99726 388 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 TBC1D10AQ9BXI6 508 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 SYNDIG1Q9H7V2 258 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 PPANQ9NQ55 473 aaKnown RBP19.12■□□□□ 0.65
CLN3-225ENST00000566824 IMP3Q9NV31 184 aaKnown RBP19.12■□□□□ 0.65
CLN3-225ENST00000566824 EVA1BQ9NVM1 165 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 INTS10Q9NVR2 710 aaKnown RBP19.12■□□□□ 0.65
CLN3-225ENST00000566824 GNPTGQ9UJJ9 305 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 PSAT1Q9Y617 370 aa19.12■□□□□ 0.65
CLN3-225ENST00000566824 OR5K4A6NMS3 321 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 QSOX1O00391 747 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 NTN3O00634 580 aaPredicted RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 C1QAP02745 245 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 AHSGP02765 367 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 MTHFD1P11586 935 aaKnown RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 PKMP14618 531 aaKnown RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 SLC2A4P14672 509 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 PNLIPP16233 465 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 LEPRP48357 1165 aaKnown RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 CFHR1Q03591 330 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 FRG1Q14331 258 aaKnown RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 AMZ1Q400G9 498 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 RNF187Q5TA31 235 aaPredicted RBP19.11■□□□□ 0.65
CLN3-225ENST00000566824 LRRC6Q86X45 466 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 PHC3Q8NDX5 983 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 GSDMBQ8TAX9 411 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 CALML6Q8TD86 181 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 C12orf66Q96MD2 445 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 LRRN3Q9H3W5 708 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 VPS37BQ9H9H4 285 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 SLC40A1Q9NP59 571 aa19.11■□□□□ 0.65
CLN3-225ENST00000566824 IGHV1OR21-1A0A087WYE8 117 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 KLHL33A6NCF5 533 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 CXorf49A8MYA2 514 aaPredicted RBP19.1■□□□□ 0.65
CLN3-225ENST00000566824 LIN7AO14910 233 aaPredicted RBP19.1■□□□□ 0.65
CLN3-225ENST00000566824 GPC4O75487 556 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 VIPP01282 170 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 ESR1P03372 595 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 SLC35G4P0C7Q5 338 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 CD1CP29017 333 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 HALP42357 657 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 PDX1P52945 283 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 PGGT1BP53609 377 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 ADARP55265 1226 aaKnown RBP19.1■□□□□ 0.65
CLN3-225ENST00000566824 TIAL1Q01085 375 aaKnown RBP eCLIP19.1■□□□□ 0.65
CLN3-225ENST00000566824 E2F1Q01094 437 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms