RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 NUAK1O60285 661 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 DIAPH2O60879 1101 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 ZNF8P17098 575 aaPredicted RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 IDH3AP50213 366 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 INPP5AQ14642 412 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 IRF4Q15306 451 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 FAM219BQ5XKK7 198 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 DOK6Q6PKX4 331 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 YTHDF3Q7Z739 585 aaKnown RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 MAPK15Q8TD08 544 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 PPP1R36Q96LQ0 422 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 C1QTNF2Q9BXJ5 285 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 KDM4CQ9H3R0 1056 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 NCKAP1Q9Y2A7 1128 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 FIS1Q9Y3D6 152 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 OARD1Q9Y530 152 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 STX16-NPEPL1H3BU86 382 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 STX16O14662 325 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 GPC4O75487 556 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 UBOX5O94941 541 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 CHRNB1P11230 501 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 PREPP48147 710 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 CDK3Q00526 305 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 SYTL3Q4VX76 610 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 TMEM259Q4ZIN3 620 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 TMEM31Q5JXX7 168 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 KIAA1161Q6NSJ0 714 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 TRPC4APQ8TEL6 797 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 COX14Q96I36 57 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 TRMOQ9BU70 441 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 SLC17A9Q9BYT1 436 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 EPHX3Q9H6B9 360 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 FZD4Q9ULV1 537 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.87■□□□□ 0.93
CLN3-209ENST00000561689 OR1A2Q9Y585 309 aa20.87■□□□□ 0.93
CLN3-209ENST00000561689 EIF3FO00303 357 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 GRID2O43424 1007 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 LILRB5O75023 590 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 S100BP04271 92 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 VCLP18206 1134 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 GABRG2P18507 467 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 GTF2H3Q13889 308 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 AGERQ15109 404 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 PUS10Q3MIT2 529 aaKnown RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 ANKS6Q68DC2 871 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 CRTC3Q6UUV7 619 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 USP30Q70CQ3 517 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 ZNF547Q8IVP9 402 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 TP53I13Q8NBR0 393 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 HMGB4Q8WW32 186 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 SKA1Q96BD8 255 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 PRR11Q96HE9 360 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 SEMA4BQ9NPR2 832 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 DNAJC28Q9NX36 388 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 EIF2B4Q9UI10 523 aaKnown RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 TMCO1Q9UM00 188 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 HDAC3O15379 428 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 SLCO2B1O94956 709 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 SNUPNO95149 360 aaKnown RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 JUNP05412 331 aaKnown RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 RPS17P08708 135 aaKnown RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 PPP2CBP62714 309 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 PPP2CAP67775 309 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 SH3BP2P78314 561 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 CLCQ05315 142 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 GALNT1Q10472 559 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 BCL7AQ4VC05 210 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 EPGNQ6UW88 154 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 MBOAT1Q6ZNC8 495 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 KBTBD6Q86V97 674 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 HORMAD1Q86X24 394 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 ASB11Q8WXH4 323 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 EGFL8Q99944 293 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 NUF2Q9BZD4 464 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 ARHGEF3Q9NR81 526 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 GULP1Q9UBP9 304 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 ZFP69BQ9UJL9 534 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 PRKAB1Q9Y478 270 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 PCYT1BQ9Y5K3 369 aaPredicted RBP20.86■□□□□ 0.93
CLN3-209ENST00000561689 COL6A3P12111 3177 aa20.86■□□□□ 0.93
CLN3-209ENST00000561689 VEGFDO43915 354 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 TPMTP51580 245 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PDCD2Q16342 344 aaPredicted RBP20.85■□□□□ 0.93
CLN3-209ENST00000561689 SLC9B1Q4ZJI4 515 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 UBE2R2Q712K3 238 aaPredicted RBP20.85■□□□□ 0.93
CLN3-209ENST00000561689 TMEM159Q96B96 161 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 TRPM6Q9BX84 2022 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 LMAN1LQ9HAT1 526 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PREBQ9HCU5 417 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 MID1IP1Q9NPA3 183 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 FZD3Q9NPG1 666 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PCTPQ9UKL6 214 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 NUMA1Q14980 2115 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 SLC31A1O15431 190 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 MPC1LP0DKB6 136 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 ACSL1P33121 698 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 MAGEA9P43362 315 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 TUBB3Q13509 450 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 PLA2G4EQ3MJ16 856 aa20.85■□□□□ 0.93
CLN3-209ENST00000561689 CLNKQ7Z7G1 428 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms