RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 ASCL3Q9NQ33 180 aa13.59□□□□□ -0.23
TPM1-230ENST00000561266 GALPQ9UBC7 116 aa13.59□□□□□ -0.23
TPM1-230ENST00000561266 CDYLQ9Y232 598 aa13.59□□□□□ -0.23
TPM1-230ENST00000561266 SNX24Q9Y343 169 aa13.59□□□□□ -0.23
TPM1-230ENST00000561266 SNRNP200O75643 2136 aaKnown RBP13.58□□□□□ -0.23
TPM1-230ENST00000561266 SLC5A10A0PJK1 596 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 LILRA5A6NI73 299 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 BHMG1C9JSJ3 638 aaPredicted RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 AP2A2O94973 939 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 SEC31AO94979 1220 aaKnown RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 SLC2A4P14672 509 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 ITIH1P19827 911 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 LIMK2P53671 638 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 CSE1LP55060 971 aaKnown RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 GFERP55789 205 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 DHX34Q14147 1143 aaKnown RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 ST3GAL2Q16842 350 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 FOXR1Q6PIV2 292 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 CERS6Q6ZMG9 384 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 SYDE1Q6ZW31 735 aaPredicted RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 ZNF572Q7Z3I7 529 aaPredicted RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 DENND6AQ8IWF6 608 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 TRIM48Q8IWZ4 208 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 NCSTNQ92542 709 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 RSC1A1Q92681 617 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 PMEPA1Q969W9 287 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 CXorf40BQ96DE9 158 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 LIN37Q96GY3 246 aaPredicted RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 BIRC8Q96P09 236 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 POLR1BQ9H9Y6 1135 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 UCK1Q9HA47 277 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 IMP3Q9NV31 184 aaKnown RBP13.58□□□□□ -0.24
TPM1-230ENST00000561266 ACSL5Q9ULC5 683 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 MAD1L1Q9Y6D9 718 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 AK5Q9Y6K8 562 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 RPS6KL1Q9Y6S9 549 aa13.58□□□□□ -0.24
TPM1-230ENST00000561266 KMT2BQ9UMN6 2715 aaPredicted RBP13.57□□□□□ -0.24
TPM1-230ENST00000561266 LAMA5O15230 3695 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 A8MU76 341 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 S1PR4O95977 384 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 TPBGLP0DKB5 382 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 THRAP10827 490 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 CCL4P13236 92 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 ACADLP28330 430 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 LEPRP48357 1165 aaKnown RBP13.57□□□□□ -0.24
TPM1-230ENST00000561266 LSSP48449 732 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 EPHA4P54764 986 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 CTBP1Q13363 440 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 TYSND1Q2T9J0 566 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 BBS9Q3SYG4 887 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 SNAP47Q5SQN1 464 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 PHF19Q5T6S3 580 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 LYPLAL1Q5VWZ2 237 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 NEPROQ6NW34 567 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 TMEM71Q6P5X7 295 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 HOOK3Q86VS8 718 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 PROSER1Q86XN7 944 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 OR4D9Q8NGE8 314 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 OR10G6Q8NH81 332 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 ELMO1Q92556 727 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 LPGAT1Q92604 370 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 SH3KBP1Q96B97 665 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 NXPE2Q96DL1 559 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 STAMBPL1Q96FJ0 436 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 EBNA1BP2Q99848 306 aaKnown RBP13.57□□□□□ -0.24
TPM1-230ENST00000561266 DPH5Q9H2P9 285 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 POT1Q9NUX5 634 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 PDP2Q9P2J9 529 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 SLC17A6Q9P2U8 582 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 DKK4Q9UBT3 224 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 CDC23Q9UJX2 597 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 RAXQ9Y2V3 346 aa13.57□□□□□ -0.24
TPM1-230ENST00000561266 ANKRD11Q6UB99 2663 aaPredicted RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 CCDC187A0A096LP49 1063 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 SRRM3A6NNA2 597 aaPredicted RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 EFCAB8A8MWE9 144 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 PRMT5O14744 637 aaPredicted RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 KIF1CO43896 1103 aaKnown RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 URI1O94763 535 aaPredicted RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 USP1O94782 785 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 UBXN7O94888 489 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 FMO4P31512 558 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 ELK3P41970 407 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 HALP42357 657 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 GPLD1P80108 840 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 BOP1Q14137 746 aaKnown RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 FASTKD3Q14CZ7 662 aaKnown RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 MORF4L2Q15014 288 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 DUPD1Q68J44 220 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 ZNF549Q6P9A3 640 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 RAB11FIP2Q7L804 512 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 ARHGAP22Q7Z5H3 698 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 PCGF5Q86SE9 256 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 CILP2Q8IUL8 1156 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 WDR36Q8NI36 951 aaKnown RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.56□□□□□ -0.24
TPM1-230ENST00000561266 SNF8Q96H20 258 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 AHCYL2Q96HN2 611 aaKnown RBP13.56□□□□□ -0.24
TPM1-230ENST00000561266 RUNDC3BQ96NL0 473 aa13.56□□□□□ -0.24
TPM1-230ENST00000561266 TMEM74Q96NL1 305 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms