RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 NSMCE3Q96MG7 304 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 ATG10Q9H0Y0 220 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 CFAP97Q9P2B7 532 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 GPN3Q9UHW5 284 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 RPL36Q9Y3U8 105 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TELO2Q9Y4R8 837 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 FABP12A6NFH5 140 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 C2orf71A6NGG8 1288 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF99A8MXY4 864 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 GLUD2P49448 558 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 RPS14P62263 151 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 MPP1Q00013 466 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 KIAA0930Q6ICG6 404 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 GPR142Q7Z601 462 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 PIGWQ7Z7B1 504 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 BANPQ8N9N5 519 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 OR6K2Q8NGY2 324 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 OR52J3Q8NH60 311 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 OR10A6Q8NH74 314 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TNFRSF25Q93038 417 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 ART5Q96L15 291 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TAPBPLQ9BX59 468 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF282Q9UDV7 671 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 EVLQ9UI08 416 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 PMF1-BGLAPU3KQ54 211 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 DNM1LO00429 736 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 MSI1O43347 362 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 NOL4O94818 638 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 SERPINA3P01011 423 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 AZGP1P25311 298 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 CORO1AP31146 461 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TSPAN5P62079 268 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 HERC3Q15034 1050 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 LDLRAP1Q5SW96 308 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 PTF1AQ7RTS3 328 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLITRK4Q8IW52 837 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 FSTL5Q8N475 847 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 BRSK1Q8TDC3 778 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 CCDC115Q96NT0 180 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 CAMK1GQ96NX5 476 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 ERMAPQ96PL5 475 aaPredicted RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 HNRNPABQ99729 332 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 MIR1-1HGQ9H1L0 117 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 RC3H2Q9HBD1 1191 aaKnown RBP13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TAS2R1Q9NYW7 299 aa13.04□□□□□ -0.32
CSPG4P11-201ENST00000560634 TULP2O00295 520 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 OR4F21O95013 312 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 KCNA5P22460 613 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLC7A1P30825 629 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF155Q12901 538 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ECM1Q16610 540 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 CADM2Q8N3J6 435 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 NETO2Q8NC67 525 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ACOT12Q8WYK0 555 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 INTS10Q9NVR2 710 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 IGSF9Q9P2J2 1179 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PCDHGB7Q9Y5F8 929 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PITPNM1O00562 1244 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 GADD45GO95257 159 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 POP4O95707 220 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLC35G6P0C7Q6 338 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 IL10RBQ08334 325 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 CRTC2Q53ET0 693 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PACRGLQ8N7B6 248 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 RIT1Q92963 219 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZSWIM3Q96MP5 696 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 THUMPD1Q9NXG2 353 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 CDH7Q9ULB5 785 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 CFL2Q9Y281 166 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 BCL9O00512 1426 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TCRBV7S2A1N4TA0A589 114 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 INSIG1O15503 277 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TLX3O43711 291 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PAPSS2O95340 614 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 CXCL14O95715 111 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 C8BP07358 591 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 GNAZP19086 355 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 DSC2Q02487 901 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 FUT2Q10981 343 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TSC22D1Q15714 1073 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 DCAKDQ8WVC6 231 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 FEM1AQ9BSK4 669 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 NIFKQ9BYG3 293 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PLEKHA1Q9HB21 404 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ARHGAP23Q9P227 1491 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 FAM234BA2RU67 622 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 NEDD8-MDP1E9PL57 170 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 GABRDO14764 452 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLC22A1O15245 554 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TP73O15350 636 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PEPDP12955 493 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 LAG3P18627 525 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ITIH1P19827 911 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ARCN1P48444 511 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 JAM2P57087 298 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 STXBP1P61764 594 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 FASTKD3Q14CZ7 662 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 RNASE12Q5GAN4 147 aaKnown RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 MCEMP1Q8IX19 187 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms