RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CTSCP53634 463 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 PKNOX1P55347 436 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 SEC13P55735 322 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RPS14P62263 151 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 ELF3P78545 371 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 CDKL1Q00532 357 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 KLF10Q13118 480 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 NAA25Q14CX7 972 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 AGERQ15109 404 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 BCL7AQ4VC05 210 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TMEM196Q5HYL7 178 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TTC23LQ6PF05 361 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RINLQ6ZS11 566 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RALGPS2Q86X27 583 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 VRK3Q8IV63 474 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 OR2T3Q8NH03 318 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ESAMQ96AP7 390 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 FAM131CQ96AQ9 280 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RHBDF1Q96CC6 855 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 CMTM5Q96DZ9 223 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RAB3IPQ96QF0 476 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 MIPEPQ99797 713 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 C8orf33Q9H7E9 229 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 FBRSQ9HAH7 460 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TCF20Q9UGU0 1960 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 PLXNA2O75051 1894 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 OR2AG2A6NM03 316 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 B2RBV5 119 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 INPP4BO15327 924 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ATG13O75143 517 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 MNAT1P51948 309 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 COPAP53621 1224 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 FOXA1P55317 472 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 CDC16Q13042 620 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 SP140Q13342 867 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 BOP1Q14137 746 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 C18orf21Q32NC0 220 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 ZNF658BQ4V348 819 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 ZNF776Q68DI1 518 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 NXNQ6DKJ4 435 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TMEM220Q6QAJ8 160 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 LARP4Q71RC2 724 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP3-213ENST00000559711 SYVN1Q86TM6 617 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TMPRSS6Q8IU80 811 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 SLC44A3Q8N4M1 653 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TEX9Q8N6V9 391 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 BEND7Q8N7W2 519 aaPredicted RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 IL17RCQ8NAC3 791 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ELMO1Q92556 727 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ERLEC1Q96DZ1 483 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 C19orf60Q96EN9 201 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 CCM2Q9BSQ5 444 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 NUSAP1Q9BXS6 441 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 CADM1Q9BY67 442 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 CD244Q9BZW8 370 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ZCCHC2Q9C0B9 1178 aaKnown RBP12.45□□□□□ -0.42
USP3-213ENST00000559711 C1orf21Q9H246 121 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 KCNK12Q9HB15 430 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 PARVBQ9HBI1 364 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 TRIM39Q9HCM9 518 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 MRGBPQ9NV56 204 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 PDE10AQ9Y233 779 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 ST14Q9Y5Y6 855 aa12.45□□□□□ -0.42
USP3-213ENST00000559711 PLXNB3Q9ULL4 1909 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 SLC5A10A0PJK1 596 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GYG2O15488 501 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GSC2O15499 205 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 LILRB5O75023 590 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 MATN4O95460 622 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GUCA1CO95843 209 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 EGFP01133 1207 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 ANXA5P08758 320 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 C7P10643 843 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 UROSP10746 265 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 DRD1P21728 446 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 PRDX3P30048 256 aaKnown RBP12.44□□□□□ -0.42
USP3-213ENST00000559711 GGT5P36269 586 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 RPIAP49247 311 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GTF2H2Q13888 395 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 TMEM198Q66K66 360 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 RAET1GQ6H3X3 334 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 SDE2Q6IQ49 451 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 KIAA1211LQ6NV74 962 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GTF2H2CQ6P1K8 395 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 ADAMTSL4Q6UY14 1074 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 GPRIN3Q6ZVF9 776 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 UBE2R2Q712K3 238 aaPredicted RBP12.44□□□□□ -0.42
USP3-213ENST00000559711 EFL1Q7Z2Z2 1120 aaKnown RBP12.44□□□□□ -0.42
USP3-213ENST00000559711 GOLGA7Q7Z5G4 137 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 ADGRG6Q86SQ4 1221 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 LONP2Q86WA8 852 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 HDDC3Q8N4P3 179 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 CHCHD4Q8N4Q1 142 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 TWIST2Q8WVJ9 160 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 DNASE1L2Q92874 299 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 ZNF514Q96K75 400 aaPredicted RBP12.44□□□□□ -0.42
USP3-213ENST00000559711 C3orf30Q96M34 536 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 EGFL8Q99944 293 aa12.44□□□□□ -0.42
USP3-213ENST00000559711 TMEM79Q9BSE2 394 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms