RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CKMT2P17540 419 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CCR7P32248 378 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CTNNB1P35222 781 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZFP36L2P47974 494 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 KCNK10P57789 538 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CDKL1Q00532 357 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 NFYCQ13952 458 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 BOP1Q14137 746 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 PTGR1Q14914 329 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ATP6AP1LQ52LC2 224 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 MTX3Q5HYI7 312 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 SAMD4BQ5PRF9 694 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 MPP7Q5T2T1 576 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 GPRC6AQ5T6X5 926 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 C8orf82Q6P1X6 216 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 GRASPQ7Z6J2 395 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 VRK3Q8IV63 474 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 TMEM102Q8N9M5 508 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 PROKR1Q8TCW9 393 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 EME1Q96AY2 570 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 LMLNQ96KR4 655 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 C1QTNF3Q9BXJ4 246 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 FAM126AQ9BYI3 521 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 VCX3BQ9H321 246 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 SLC52A3Q9NQ40 469 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 TDP1Q9NUW8 608 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 UBAP1Q9NZ09 502 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 NUDT4Q9NZJ9 180 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 RNF11Q9Y3C5 154 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 LIN7AO14910 233 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 RAD51BO15315 384 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PABPC1P11940 636 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 NELFEP18615 380 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 DGKAP23743 735 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 RGS4P49798 205 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 RHDQ02161 417 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PDK3Q15120 406 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 AP5B1Q2VPB7 878 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CARD16Q5EG05 197 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 FOXB2Q5VYV0 432 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZFP1Q6P2D0 407 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 TPRG1Q6ZUI0 275 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 RALGPS2Q86X27 583 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 BADQ92934 168 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 IRF7Q92985 503 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZNF382Q96SR6 550 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CIB1Q99828 191 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 GPATCH1Q9BRR8 931 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 TMEM79Q9BSE2 394 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 VCXQ9H320 206 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PIDD1Q9HB75 910 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 AIG1Q9NVV5 245 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 BCAP29Q9UHQ4 241 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 TMPRSS11EQ9UL52 423 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 POLR3HQ9Y535 204 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZFC3H1O60293 1989 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 LTBP2Q14767 1821 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CCDC154A6NI56 674 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PEX1O43933 1283 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PRR35P0CG20 571 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 HMOX2P30519 316 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 AKT1P31749 480 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 GJA8P48165 433 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ATP4BP51164 291 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 POLR2JP52435 117 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 MESP2Q0VG99 397 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 TRAF3Q13114 568 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CPSF6Q16630 551 aaKnown RBP eCLIP10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZXDCQ2QGD7 858 aaPredicted RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 GRAMD4Q6IC98 578 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 Q6ZVL8 140 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 USP45Q70EL2 814 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ADIPOR2Q86V24 386 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 MRPL43Q8N983 215 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 OR2A12Q8NGT7 310 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 CLHC1Q8NHS4 586 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 FOXJ1Q92949 421 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 COPS8Q99627 209 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 SPATA16Q9BXB7 569 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 COQ10BQ9H8M1 238 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZDHHC7Q9NXF8 308 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 KLQ9UEF7 1012 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 SLC25A13Q9UJS0 675 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 PTBP2Q9UKA9 531 aaKnown RBP10.44□□□□□ -0.74
CUX1-217ENST00000558836 HS3ST2Q9Y278 367 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 ZNF510Q9Y2H8 683 aa10.44□□□□□ -0.74
CUX1-217ENST00000558836 A0A1W2PP18 115 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 OR2AG2A6NM03 316 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 LOC730098B7Z3J9 87 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 GRM6O15303 877 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 C1SP09871 688 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 SLC2A4P14672 509 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 CD9P21926 228 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ERVK-8P63133 956 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 RPL38P63173 70 aaKnown RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 ILF2Q12905 390 aaKnown RBP10.43□□□□□ -0.74
CUX1-217ENST00000558836 ARSIQ5FYB1 569 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 KIAA2013Q8IYS2 634 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 ROPN1LQ96C74 230 aa10.43□□□□□ -0.74
CUX1-217ENST00000558836 RHBDF1Q96CC6 855 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms