RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 UCMAQ8WVF2 138 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 PRCCQ92733 491 aaPredicted RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 ZNF653Q96CK0 615 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 HMCESQ96FZ2 354 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 KLHL32Q96NJ5 620 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 DDX50Q9BQ39 737 aaKnown RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 CNPY3Q9BT09 278 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 SNRNP25Q9BV90 132 aaKnown RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 TLR10Q9BXR5 811 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 EDEM3Q9BZQ6 932 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 ZYG11BQ9C0D3 744 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 RSPH9Q9H1X1 276 aaPredicted RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 VPS11Q9H270 941 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 DHX35Q9H5Z1 703 aaKnown RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 FZD3Q9NPG1 666 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 FBXL12Q9NXK8 326 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 SIDT1Q9NXL6 827 aaKnown RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 DLL3Q9NYJ7 618 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 SUN2Q9UH99 717 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 SLC12A6Q9UHW9 1150 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 VPS28Q9UK41 221 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 STAP1Q9ULZ2 295 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 MYO6Q9UM54 1294 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 CEP83Q9Y592 693 aa4.29□□□□□ -1.72
SPG11-211ENST00000558561 TP53BP1Q12888 1972 aaPredicted RBP4.29□□□□□ -1.72
SPG11-211ENST00000558561 ITIH6Q6UXX5 1313 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ASXL3Q9C0F0 2248 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3DA0A087WVF3 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3IA0A087WXS9 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3EA0A087X179 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3KA0A087X1G2 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 A0A1B0GVM2 712 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 A0A1B0GVT2 93 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ILVBLA1L0T0 632 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TARSL2A2RTX5 802 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3FA6NER0 549 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 A8MX80 341 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3LB9A6J9 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RASA4BC9J798 803 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 DIRC3C9JPN6 131 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NPIPB8E9PQR5 432 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RNASET2O00584 256 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 MCF2LO15068 1137 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RAD51BO15315 384 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RASA4O43374 803 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 KDELR3O43731 214 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CLDN11O75508 207 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RNASEH2AO75792 299 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 RHOBTB1O94844 696 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 PEX11BO96011 259 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CFIP05156 583 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CYP1A2P05177 515 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ATP5BP06576 529 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 SRPRAP08240 638 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3HP0C7X1 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 SLC2A3P11169 496 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TNNT1P13805 278 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CD59P13987 128 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ENGP17813 658 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TNFRSF1AP19438 455 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 EPHB2P29323 1055 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 HNRNPH3P31942 346 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 CHRNA3P32297 505 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 PIK3CGP48736 1102 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 PAPOLAP51003 745 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 ARSEP51690 589 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CLDN6P56747 220 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 GSCP56915 257 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 CLDN2P57739 230 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RAB1AP62820 205 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 IL9RQ01113 521 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 OCA2Q04671 838 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TUBA3CQ13748 450 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 SHBQ15464 509 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 CST6Q15828 149 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 KIF19Q2TAC6 998 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TDRD12Q587J7 1177 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 ZNF542PQ5EBM4 170 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 PPP6R3Q5H9R7 873 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 RABGAP1LQ5R372 815 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ERMARDQ5T6L9 678 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 N4BP2L1Q5TBK1 243 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 STPG1Q5TH74 334 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 KCTD16Q68DU8 428 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3GQ6DHY5 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 IL31Q6EBC2 164 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3CQ6IPX1 549 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 AADACL2Q6P093 401 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TUBA3EQ6PEY2 450 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NCEH1Q6PIU2 408 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NPNTQ6UXI9 565 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RAD9BQ6WBX8 426 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RFLNAQ6ZTI6 216 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 LPCAT2Q7L5N7 544 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 DAAM2Q86T65 1068 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TBC1D3Q8IZP1 549 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 PELI3Q8N2H9 469 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 PGBD5Q8N414 524 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ZCCHC9Q8N567 271 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms