RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SLC1A7O00341 560 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 LSM1O15116 133 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ADAM23O75077 832 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 CNOT3O75175 753 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 EIF2S1P05198 315 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 G6PDP11413 515 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 IL7RP16871 459 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ERVPABLB-1P60509 514 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ISL1P61371 349 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 CD47Q08722 323 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 KCNAB2Q13303 367 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PTPRCAPQ14761 206 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 SPCS2Q15005 226 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 NFE2Q16621 373 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 SCN4BQ8IWT1 228 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ZCCHC7Q8N3Z6 543 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 SLC13A3Q8WWT9 602 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 IGSF8Q969P0 613 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 TBC1D20Q96BZ9 403 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ABHD8Q96I13 439 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 CEP295NLQ96MC4 621 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PARK7Q99497 189 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 AMBRA1Q9C0C7 1298 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 FBXO8Q9NRD0 319 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ADGRE2Q9UHX3 823 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 EIF2B4Q9UI10 523 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 EIF3LQ9Y262 564 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PLXNA3P51805 1871 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 TRIP12Q14669 1992 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-231ENST00000557433 GBF1Q92538 1859 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 ELOVL7A1L3X0 281 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 OTCP00480 354 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 IL6P05231 212 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 HTR1AP08908 422 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 PCMT1P22061 227 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 HTR1BP28222 390 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 OR1E1P30953 314 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 CXCR4P61073 352 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 RING1Q06587 406 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 CYP4F3Q08477 520 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 SELPLGQ14242 412 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 KIAA0040Q15053 153 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 NR6A1Q15406 480 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 CTF1Q16619 201 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 DGUOKQ16854 277 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 IL27RAQ6UWB1 636 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 FIG4Q92562 907 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 LINGO1Q96FE5 620 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 MS4A4AQ96JQ5 239 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 TRIT1Q9H3H1 467 aaKnown RBP16.03■□□□□ 0.16
SHMT2-231ENST00000557433 ACTL8Q9H568 366 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 PIF1Q9H611 641 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 ASIC5Q9NY37 505 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 IL37Q9NZH6 218 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 LIMD1Q9UGP4 676 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 ERVW-1Q9UQF0 538 aa16.03■□□□□ 0.16
SHMT2-231ENST00000557433 MYO16Q9Y6X6 1858 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 CCL15-CCL14A0A0B4J2E2 113 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 KRBA1A5PL33 1030 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 NCF1BA6NI72 391 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 NCF1CA8MVU1 366 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 ENPP3O14638 875 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 RECQL5O94762 991 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 IGLV3-27P01718 113 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 ESR1P03372 595 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 S100BP04271 92 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 NCF1P14598 390 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 IDUAP35475 653 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 NRIP1P48552 1158 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 TMED10P49755 219 aaKnown RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 HK3P52790 923 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 MAPK10P53779 464 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 MLLT10P55197 1068 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 AQP6Q13520 282 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 CCL15Q16663 113 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 CYP2A13Q16696 494 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 MEP1AQ16819 746 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 AP5B1Q2VPB7 878 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 ATG9BQ674R7 924 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 RAP1GAP2Q684P5 730 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 IL31Q6EBC2 164 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 SCIMPQ6UWF3 145 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 GLT6D1Q7Z4J2 308 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 ADAMTSL2Q86TH1 951 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 STK40Q8N2I9 435 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 OR7A2PQ8NGA2 310 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 OR4K2Q8NGD2 314 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 CD200R1Q8TD46 325 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 NSMCE3Q96MG7 304 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 RPRD1AQ96P16 312 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 MTRRQ9UBK8 725 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 TPRKBQ9Y3C4 175 aa16.02■□□□□ 0.16
SHMT2-231ENST00000557433 GOLGB1Q14789 3259 aaKnown RBP16.02■□□□□ 0.16
SHMT2-231ENST00000557433 SLC28A1O00337 649 aa16.02■□□□□ 0.15
SHMT2-231ENST00000557433 MUSKO15146 869 aa16.02■□□□□ 0.15
SHMT2-231ENST00000557433 RGS14O43566 566 aa16.02■□□□□ 0.15
SHMT2-231ENST00000557433 CAPN1P07384 714 aa16.02■□□□□ 0.15
SHMT2-231ENST00000557433 PCNAP12004 261 aa16.02■□□□□ 0.15
SHMT2-231ENST00000557433 LPOP22079 712 aaPredicted RBP16.02■□□□□ 0.15
SHMT2-231ENST00000557433 SOX11P35716 441 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms