RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CSO75390 466 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 RPS3P23396 243 aaKnown RBP eCLIP13.3□□□□□ -0.284e-7■■■□□ 15.3
SHMT2-228ENST00000557302 EIF3BP55884 814 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CAV1Q03135 178 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 PDIA2Q13087 525 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 BOP1Q14137 746 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CLPPQ16740 277 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 MAP9Q49MG5 647 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 ZNF658BQ4V348 819 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 SYTL3Q4VX76 610 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 HP1BP3Q5SSJ5 553 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 PTRHD1Q6GMV3 140 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 TMEM26Q6ZUK4 368 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CENPUQ71F23 418 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 KCNMB4Q86W47 210 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 MARCH9Q86YJ5 346 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 IGDCC3Q8IVU1 814 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 MMGT1Q8N4V1 131 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CEP112Q8N8E3 955 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 OR10G6Q8NH81 332 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 GABPB2Q8TAK5 448 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 LPGAT1Q92604 370 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CFAP36Q96G28 342 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 AHCYL2Q96HN2 611 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 RMDN2Q96LZ7 410 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 C12orf66Q96MD2 445 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 FAM167BQ9BTA0 163 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 LRRC1Q9BTT6 524 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 ZMYND15Q9H091 742 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 P2RY12Q9H244 342 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 UCK1Q9HA47 277 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 EPB41L5Q9HCM4 733 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 IMP3Q9NV31 184 aaKnown RBP13.3□□□□□ -0.28
SHMT2-228ENST00000557302 TEX264Q9Y6I9 313 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 CFAP47Q6ZTR5 3102 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 ASPMQ8IZT6 3477 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 IGHV1OR21-1A0A087WYE8 117 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 LILRA5A6NI73 299 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 E7ESA3 106 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 IFRD1O00458 451 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 CPNE6O95741 557 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 MTHFD1P11586 935 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 ITGB6P18564 788 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 CD1CP29017 333 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 PREPP48147 710 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 EPHA4P54764 986 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 PLTPP55058 493 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 GPLD1P80108 840 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 SLC7A5Q01650 507 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 PLOD1Q02809 727 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 ISXQ2M1V0 245 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 HSP90AA5PQ58FG0 334 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 NKAIN2Q5VXU1 208 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 CAPRIN2Q6IMN6 1127 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 UNC5AQ6ZN44 842 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 NOA1Q8NC60 698 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 FBXO36Q8NEA4 188 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 LKAAEAR1Q8TD35 194 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 GRAMD1AQ96CP6 724 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 PANX3Q96QZ0 392 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 INSM2Q96T92 566 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 WDR83Q9BRX9 315 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 CARD6Q9BX69 1037 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 OR52A5Q9H2C5 316 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 SLC40A1Q9NP59 571 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 INTS10Q9NVR2 710 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 ATXN7L1Q9ULK2 861 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 PCDHB1Q9Y5F3 818 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 HEBP2Q9Y5Z4 205 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 CFAP20Q9Y6A4 193 aaKnown RBP13.29□□□□□ -0.28
SHMT2-228ENST00000557302 ZZEF1O43149 2961 aa13.29□□□□□ -0.28
SHMT2-228ENST00000557302 WDFY3Q8IZQ1 3526 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 TPRP12270 2363 aaKnown RBP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 PRAMEF33A0A0G2JMD5 474 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 IQCF5A8MTL0 148 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 H3BMM5 538 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 EIF3HO15372 352 aaKnown RBP eCLIP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 DUX1O43812 170 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ESR1P03372 595 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ERVK-10P10266 1014 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 PDHA2P29803 388 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 FMO4P31512 558 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CCR7P32248 378 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 SLC1A2P43004 574 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 MAPK9P45984 424 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CD151P48509 253 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 PDX1P52945 283 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ADARP55265 1226 aaKnown RBP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CBLBQ13191 982 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 CTBP1Q13363 440 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 GPR18Q14330 331 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 BRD3Q15059 726 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 TMED2Q15363 201 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 STEAP4Q687X5 459 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 DUS1LQ6P1R4 473 aaKnown RBP13.28□□□□□ -0.28
SHMT2-228ENST00000557302 USP53Q70EK8 1073 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 PIM3Q86V86 326 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ANKMY2Q8IV38 441 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 DENND6AQ8IWF6 608 aa13.28□□□□□ -0.28
SHMT2-228ENST00000557302 ZBED8Q8IZ13 594 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms