RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 RHNO1Q9BSD3 238 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 OSBPL2Q9H1P3 480 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 RNF121Q9H920 327 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CAB39LQ9H9S4 337 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LRRC4Q9HBW1 653 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ASAH2Q9NR71 780 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 PCDHB16Q9NRJ7 776 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 FAM49BQ9NUQ9 324 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CNTN6Q9UQ52 1028 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 DTX4Q9Y2E6 619 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 A0A1W2PP18 115 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 KHNYNO15037 678 aaKnown RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 SLC16A6O15403 523 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 ST8SIA5O15466 376 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 PAPSS2O95340 614 aaPredicted RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 RPS17P08708 135 aaKnown RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 CAPN3P20807 821 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 SREBF1P36956 1147 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 CTSKP43235 329 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 RECQLP46063 649 aaPredicted RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 C1QTNF8P60827 252 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 GTF2BQ00403 316 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 FOXM1Q08050 763 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 BAK1Q16611 211 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 BRDTQ58F21 947 aaPredicted RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 TSTD2Q5T7W7 516 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 ZNF470Q6ECI4 717 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 FBXO33Q7Z6M2 555 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 P3H2Q8IVL5 708 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 ATAD1Q8NBU5 361 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 KBTBD8Q8NFY9 601 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 NLGN4YQ8NFZ3 816 aaPredicted RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 GTF3C2Q8WUA4 911 aaPredicted RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 UPF1Q92900 1129 aaKnown RBP eCLIP9.42□□□□□ -0.9
SIX4-202ENST00000554079 AP2M1Q96CW1 435 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 RNF145Q96MT1 663 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 TSEN34Q9BSV6 310 aaKnown RBP9.42□□□□□ -0.9
SIX4-202ENST00000554079 ITPAQ9BY32 194 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 TRIM8Q9BZR9 551 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 SLC22A4Q9H015 551 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 HEXA-AS1Q9H8Q6 139 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 BRD7Q9NPI1 651 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 RNF6Q9Y252 685 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 NDUFAF1Q9Y375 327 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 TPRKBQ9Y3C4 175 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 V9GYQ6 96 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 CNTNAP4Q9C0A0 1308 aa9.42□□□□□ -0.9
SIX4-202ENST00000554079 A0A1B0GVM2 712 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 A0A1W2PQ09 198 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CLRN2A0PK11 232 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 M0R082 166 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 OGTO15294 1046 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 NOBOXO60393 691 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 DLX3O60479 287 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 MRPS14O60783 128 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 TSC22D2O75157 780 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 NDUFS6O75380 124 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 PMPCBO75439 489 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CELF2O95319 508 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 TSPAN12O95859 305 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 SERPINF2P08697 491 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ERVK-10P10266 1014 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 SELLP14151 372 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 PGAM1P18669 254 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 RPS3P23396 243 aaKnown RBP eCLIP9.41□□□□□ -0.9
SIX4-202ENST00000554079 TIE1P35590 1138 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 BRCC3P46736 316 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 DGKQP52824 942 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CDH17Q12864 832 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 GRIK2Q13002 908 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 FRG1Q14331 258 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 GRK1Q15835 563 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ZNF79Q15937 498 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 IQCCQ4KMZ1 466 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 PRSS36Q5K4E3 855 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 NOL9Q5SY16 702 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 FSTL4Q6MZW2 842 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 TMEM270Q6UE05 265 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 OTOP1Q7RTM1 612 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 PODNQ7Z5L7 613 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 NECAB2Q7Z6G3 386 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CYP2W1Q8TAV3 490 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 SYTL5Q8TDW5 730 aaPredicted RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 UTP15Q8TED0 518 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 ZNF516Q92618 1163 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 SGK3Q96BR1 496 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 SGTBQ96EQ0 304 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ATXN7L3BQ96GX2 97 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 LINC00052Q96N35 136 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 RBM14Q96PK6 669 aaKnown RBP9.41□□□□□ -0.9
SIX4-202ENST00000554079 PPP1R2P1Q96PQ5 205 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CAMKK2Q96RR4 588 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 CEP41Q9BYV8 373 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 LHX5Q9H2C1 402 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ALG2Q9H553 416 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ZCCHC4Q9H5U6 513 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 ASB7Q9H672 318 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 LDAHQ9H6V9 325 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 TNFRSF12AQ9NP84 129 aa9.41□□□□□ -0.9
SIX4-202ENST00000554079 MUTYHQ9UIF7 546 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms