RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 OR1E1P30953 314 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 HPCAL1P37235 193 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 ISL1P61371 349 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 EFEMP1Q12805 493 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 SLCO6A1Q86UG4 719 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 SIDT2Q8NBJ9 832 aaKnown RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 LINGO1Q96FE5 620 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 RPRD1AQ96P16 312 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 THUMPD3Q9BV44 507 aaKnown RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 AKIP1Q9NQ31 210 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 EVLQ9UI08 416 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 VPS9D1Q9Y2B5 631 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 SLC45A1Q9Y2W3 748 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 NAALAD2Q9Y3Q0 740 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 ZNF99A8MXY4 864 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 HS6ST1O60243 411 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 DFNA5O60443 496 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 HTR6P50406 440 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 GP2P55259 537 aaKnown RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 YBEYP58557 167 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 LAPTM5Q13571 262 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 NKG7Q16617 165 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 AP5B1Q2VPB7 878 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 LAIR2Q6ISS4 152 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 CIR1Q86X95 450 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 NAT16Q8N8M0 369 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 MINDY2Q8NBR6 621 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 PIK3C3Q8NEB9 887 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 OR7A2PQ8NGA2 310 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 OR10A6Q8NH74 314 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 EEF1AKMT1Q8WVE0 214 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 SLC35B4Q969S0 331 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 VMP1Q96GC9 406 aa17.29■□□□□ 0.36
SYNE3-202ENST00000553340 POLR3HQ9Y535 204 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-202ENST00000553340 TMEM247A6NEH6 219 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ANKRD28O15084 1053 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 LSM1O15116 133 aaKnown RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 CNOT3O75175 753 aaKnown RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 OR4Q2P0C623 313 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 PCMT1P22061 227 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 HOXC8P31273 242 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 PERM1Q5SV97 790 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 GLT6D1Q7Z4J2 308 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ADHFE1Q8IWW8 467 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 EID3Q8N140 333 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ZNF548Q8NEK5 533 aaPredicted RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 NUDT8Q8WV74 236 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 FAM162AQ96A26 154 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 TRIB3Q96RU7 358 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 HBEGFQ99075 208 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 BCL7BQ9BQE9 202 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 AP5M1Q9H0R1 490 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ABI2Q9NYB9 513 aaPredicted RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 RGS17Q9UGC6 210 aaPredicted RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 NEUROG3Q9Y4Z2 214 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 SPO11Q9Y5K1 396 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ST14Q9Y5Y6 855 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 MGEA5O60502 916 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 NIPSNAP2O75323 286 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 MSH3P20585 1137 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 CYP4F3Q08477 520 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 SLC39A12Q504Y0 691 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 LDLRAD1Q5T700 205 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 SDHAF4Q5VUM1 108 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ZNF691Q5VV52 312 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 MRPL10Q7Z7H8 261 aaKnown RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 SLC13A3Q8WWT9 602 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 RMDN1Q96DB5 314 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ZNF641Q96N77 438 aaPredicted RBP17.28■□□□□ 0.36
SYNE3-202ENST00000553340 ZBTB18Q99592 522 aa17.28■□□□□ 0.36
SYNE3-202ENST00000553340 MOXD2PA6NHM9 499 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 DRGXA6NNA5 263 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 PFDN6O15212 129 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 E2F6O75461 281 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 CTSHP09668 335 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 ALOX5P09917 674 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 CCDC159P0C7I6 412 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 AKT1P31749 480 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 AAK1Q2M2I8 961 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 ANKRD34AQ69YU3 496 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 OR5K1Q8NHB7 308 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 FBXO44Q9H4M3 255 aa17.27■□□□□ 0.36
SYNE3-202ENST00000553340 CCL15-CCL14A0A0B4J2E2 113 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 ELOVL7A1L3X0 281 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 C2orf81A6NN90 581 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 M0R3G1 203 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 SLC22A1O15245 554 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 PRKD3O94806 890 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 GABARAPO95166 117 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 SCELO95171 688 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 ITGB1P05556 798 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 PAX3P23760 479 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 CDKN1CP49918 316 aaPredicted RBP17.27■□□□□ 0.35
SYNE3-202ENST00000553340 TUSC3Q13454 348 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 IL18R1Q13478 541 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 TAF1AQ15573 450 aaPredicted RBP17.27■□□□□ 0.35
SYNE3-202ENST00000553340 CCL15Q16663 113 aa17.27■□□□□ 0.35
SYNE3-202ENST00000553340 RFTN2Q52LD8 501 aaPredicted RBP17.27■□□□□ 0.35
SYNE3-202ENST00000553340 CD200R1Q8TD46 325 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms