RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, human

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-224	ENST00000545688	MFAP5	Q13361	173 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	ISCA2	Q86U28	154 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	CEP97	Q8IW35	865 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	HJURP	Q8NCD3	748 aa	Predicted RBP	4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	SLC47A1	Q96FL8	570 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	POM121L2	Q96KW2	1035 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	EGFL8	Q99944	293 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	PYGO2	Q9BRQ0	406 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	CDK19	Q9BWU1	502 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	MBNL1	Q9NR56	388 aa	Known RBP	4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	ECHDC1	Q9NTX5	307 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	ZDHHC18	Q9NUE0	388 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	PAK5	Q9P286	719 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	TSPYL4	Q9UJ04	414 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	HECW1	Q76N89	1606 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	C9orf84	Q5VXU9	1444 aa		4.21	□□□□□ -1.74
SNHG1-224	ENST00000545688	NUP153	P49790	1475 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	PRX	Q9BXM0	1461 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688		A0A1B0GVC2	190 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	MEIOC	A2RUB1	952 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	CSPG5	O95196	566 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	NGF	P01138	241 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	HIST1H2AB	P04908	130 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	CKMT2	P17540	419 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	HIST1H2AD	P20671	130 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	MSH2	P43246	934 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	GPR143	P51810	404 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	MED22	Q15528	200 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	TST	Q16762	297 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	GTDC1	Q4AE62	458 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	TPRG1	Q6ZUI0	275 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	HIST3H2A	Q7L7L0	130 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	PLD3	Q8IV08	490 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	C1orf74	Q96LT6	269 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	TBATA	Q96M53	351 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	TRMT1	Q9NXH9	659 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	BARHL2	Q9NY43	387 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	DBNL	Q9UJU6	430 aa	Known RBP	4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	PLCH2	O75038	1416 aa		4.2	□□□□□ -1.74
SNHG1-224	ENST00000545688	TCOF1	Q13428	1488 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688		A0A0J9YWU9	116 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	TMEM8B	A6NDV4	472 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	OGG1	O15527	345 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	EML2	O95834	649 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	EIF2S1	P05198	315 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	LMO4	P61968	165 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	MEP1A	Q16819	746 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	ADAMTSL4-AS1	Q5T5F5	129 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	ALS2CL	Q60I27	953 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	TMEM198	Q66K66	360 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	ACSM2B	Q68CK6	577 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	BHLHB9	Q6PI77	547 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	FASTKD5	Q7L8L6	764 aa	Known RBP	4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	GALNT13	Q8IUC8	556 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	HACE1	Q8IYU2	909 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	CRYBG2	Q8N1P7	616 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	TRIM15	Q9C019	465 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	ATAD3A	Q9NVI7	634 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	MIOS	Q9NXC5	875 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	COQ3	Q9NZJ6	369 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	ALK	Q9UM73	1620 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	NPAT	Q14207	1427 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	SCAPER	Q9BY12	1400 aa		4.19	□□□□□ -1.74
SNHG1-224	ENST00000545688	PLA2R1	Q13018	1463 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	AGL	P35573	1532 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	OR6C76	A6NM76	312 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	TRMU	O75648	421 aa	Known RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	RTN3	O95197	1032 aa	Predicted RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	TPO	P07202	933 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	DPEP1	P16444	411 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	ZNF10	P21506	573 aa	Predicted RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	WNT5A	P41221	380 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	KCNJ10	P78508	379 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	PRKAA1	Q13131	559 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	ARHGEF16	Q5VV41	709 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	ZDHHC20	Q5W0Z9	365 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	NCEH1	Q6PIU2	408 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	DENND5B	Q6ZUT9	1274 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	CPLX4	Q7Z7G2	160 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	PPHLN1	Q8NEY8	458 aa	Known RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	OR2T6	Q8NHC8	308 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	RFFL	Q8WZ73	363 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	ARHGEF2	Q92974	986 aa	Known RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	TMEM143	Q96AN5	459 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	ELMOD3	Q96FG2	381 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	PRAC1	Q96KF2	57 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	GAD1	Q99259	594 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	SEC62	Q99442	399 aa	Known RBP	4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	RTP3	Q9BQQ7	232 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	SETD4	Q9NVD3	440 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	EHD2	Q9NZN4	543 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	RABGAP1	Q9Y3P9	1069 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	RERE	Q9P2R6	1566 aa		4.18	□□□□□ -1.74
SNHG1-224	ENST00000545688	MYH15	Q9Y2K3	1946 aa		4.17	□□□□□ -1.74
SNHG1-224	ENST00000545688	PLEKHD1	A6NEE1	506 aa		4.17	□□□□□ -1.74
SNHG1-224	ENST00000545688		H7C423	109 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms