RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 USP7Q93009 1102 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 TMEM159Q96B96 161 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 MFSD3Q96ES6 412 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 DPYSL5Q9BPU6 564 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 IL22Q9GZX6 179 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 DDX47Q9H0S4 455 aaKnown RBP14.73□□□□□ -0.05
UBE3B-212ENST00000540230 ACSL5Q9ULC5 683 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.73□□□□□ -0.05
UBE3B-212ENST00000540230 MN1Q10571 1320 aaPredicted RBP14.73□□□□□ -0.05
UBE3B-212ENST00000540230 ZFYVE26Q68DK2 2539 aa14.73□□□□□ -0.05
UBE3B-212ENST00000540230 C17orf113A0A1B0GUU1 675 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 RRP8O43159 456 aaKnown RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 TCP1P17987 556 aaKnown RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 MLLT3P42568 568 aaPredicted RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 NSG1P42857 185 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 ABCG1P45844 678 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PREPP48147 710 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 LEPRP48357 1165 aaKnown RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 NPY2RP49146 381 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PRAMEP78395 509 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 CDK16Q00536 496 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 TLE3Q04726 772 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 LAMB3Q13751 1172 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PAPD7Q5XG87 772 aaKnown RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PACS1Q6VY07 963 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 NLRP9Q7RTR0 991 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 KCNE4Q8WWG9 221 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PEX13Q92968 403 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 CAPZA3Q96KX2 299 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 NRTNQ99748 197 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 CCM2Q9BSQ5 444 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 OR52A5Q9H2C5 316 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 BFARQ9NZS9 450 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 LHX6Q9UPM6 363 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 PCDHGA7Q9Y5G6 932 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 SDK2Q58EX2 2172 aa14.72□□□□□ -0.05
UBE3B-212ENST00000540230 SMG1Q96Q15 3661 aaKnown RBP14.72□□□□□ -0.05
UBE3B-212ENST00000540230 GOLGA8MH3BSY2 632 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 C9P02748 559 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 SLC35G4P0C7Q5 338 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 AMD1P17707 334 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 CSTF2P33240 577 aaKnown RBP eCLIP14.71□□□□□ -0.05
UBE3B-212ENST00000540230 CAPZBP47756 277 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 FNTAP49354 379 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 TGIF1Q15583 401 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 LRRC69Q6ZNQ3 347 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 CREG2Q8IUH2 290 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 RBM12BQ8IXT5 1001 aaKnown RBP14.71□□□□□ -0.05
UBE3B-212ENST00000540230 AGGF1Q8N302 714 aaeCLIP14.71□□□□□ -0.05
UBE3B-212ENST00000540230 BMPERQ8N8U9 685 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 AGBL5Q8NDL9 886 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 LKAAEAR1Q8TD35 194 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 ART4Q93070 314 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 TGM7Q96PF1 710 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 KIFC1Q9BW19 673 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 EPB41L1Q9H4G0 881 aa14.71□□□□□ -0.05
UBE3B-212ENST00000540230 KLHL33A6NCF5 533 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 EFCAB7A8K855 629 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 NVLO15381 856 aaKnown RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 CAPN5O15484 640 aaPredicted RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 KLK10O43240 276 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 KIF1CO43896 1103 aaKnown RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 AP2A2O94973 939 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 CLN3Q13286 438 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 BRD3Q15059 726 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 FASTKD1Q53R41 847 aaKnown RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 FAM129CQ86XR2 697 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 PLXDC1Q8IUK5 500 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 NAT8LQ8N9F0 302 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 SGSM3Q96HU1 749 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 C9orf72Q96LT7 481 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 NAPGQ99747 312 aaPredicted RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 CATSPERZQ9NTU4 200 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 AKAP7Q9P0M2 348 aaPredicted RBP14.71□□□□□ -0.06
UBE3B-212ENST00000540230 SOX13Q9UN79 622 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 MGAQ8IWI9 3026 aa14.71□□□□□ -0.06
UBE3B-212ENST00000540230 GOLGA6L10A0A0M3HER8 536 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 IQCF5A8MTL0 148 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 GOLGA8KD6RF30 607 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 GOLGA8TH3BQL2 631 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 ITGB6P18564 788 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 SRSF6Q13247 344 aaKnown RBP14.7□□□□□ -0.06
UBE3B-212ENST00000540230 PLCL1Q15111 1095 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 FAM92BQ6ZTR7 304 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 ZFAND4Q86XD8 727 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 SERPINB12Q96P63 405 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 KIR3DX1Q9H7L2 352 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 MRM3Q9HC36 420 aaKnown RBP14.7□□□□□ -0.06
UBE3B-212ENST00000540230 APMAPQ9HDC9 416 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 IL1RAPL1Q9NZN1 696 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 SLC24A2Q9UI40 661 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 ACSL6Q9UKU0 697 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 B3GALT1Q9Y5Z6 326 aa14.7□□□□□ -0.06
UBE3B-212ENST00000540230 AP3B1O00203 1094 aa14.69□□□□□ -0.06
UBE3B-212ENST00000540230 CD3EAPO15446 510 aaKnown RBP14.69□□□□□ -0.06
UBE3B-212ENST00000540230 VAPBO95292 243 aa14.69□□□□□ -0.06
UBE3B-212ENST00000540230 PTGIRP43119 386 aa14.69□□□□□ -0.06
UBE3B-212ENST00000540230 SEPHS1P49903 392 aa14.69□□□□□ -0.06
UBE3B-212ENST00000540230 BOP1Q14137 746 aaKnown RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms