RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ALPK3Q96L96 1907 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 MTCL1Q9Y4B5 1905 aaKnown RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 SOBPA7XYQ1 873 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 PER2O15055 1255 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 RPS17P08708 135 aaKnown RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 HNRNPA1P09651 372 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 CEBPBP17676 345 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 RPS3P23396 243 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 IL2P60568 153 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 C16orf89Q6UX73 402 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 LARP4Q71RC2 724 aaKnown RBP eCLIP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 RAB44Q7Z6P3 723 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 C7orf61Q8IZ16 206 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 CLYBLQ8N0X4 340 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 CBARPQ8N350 705 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 GPR26Q8NDV2 337 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 TRPC4APQ8TEL6 797 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 SCRN2Q96FV2 425 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 LRRC3BQ96PB8 259 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 C1QTNF3Q9BXJ4 246 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 CPEB1Q9BZB8 566 aaKnown RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 CEP44Q9C0F1 390 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 WDR41Q9HAD4 459 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 RHBDL2Q9NX52 303 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 PRPF19Q9UMS4 504 aaKnown RBP10.59□□□□□ -0.71
CLIP1-210ENST00000538120 PCDHB1Q9Y5F3 818 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 DNAJC15Q9Y5T4 150 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 WNT6Q9Y6F9 365 aa10.59□□□□□ -0.71
CLIP1-210ENST00000538120 PRSS51A0A1B0GVH4 220 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 C7orf72A4D263 438 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 BNIP3LO60238 219 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 TNFAIP8O95379 198 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 CDK4P11802 303 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 LHCGRP22888 699 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 AGTR2P50052 363 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 HPCAP84074 193 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ECT2LQ008S8 904 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 CLCQ05315 142 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 APOFQ13790 326 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 CBX2Q14781 532 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 IL23RQ5VWK5 629 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 KANK2Q63ZY3 851 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 RFLNAQ6ZTI6 216 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 TPRG1Q6ZUI0 275 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 AHI1Q8N157 1196 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 AFAP1L2Q8N4X5 818 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PCDH20Q8N6Y1 951 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 TMEM102Q8N9M5 508 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ING5Q8WYH8 240 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ATP6V1E2Q96A05 226 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 TMIGD2Q96BF3 282 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PDLIM5Q96HC4 596 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PLEKHG4BQ96PX9 1271 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ASB2Q96Q27 587 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 MCCC1Q96RQ3 725 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 SERPINI1Q99574 410 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 MRPS26Q9BYN8 205 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 Q9H521 79 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ZNF696Q9H7X3 374 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 LIN28AQ9H9Z2 209 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 SARS2Q9NP81 518 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 MID1IP1Q9NPA3 183 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ASB1Q9Y576 335 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 CHD7Q9P2D1 2997 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 GLYATL1P3A0A0U1RQE8 302 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 AGAP14A8MT82 685 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 E5RI56 91 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 STX16O14662 325 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 POP4O95707 220 aaKnown RBP10.58□□□□□ -0.72
CLIP1-210ENST00000538120 FAM58BPP0C7Q3 252 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ACRV1P26436 265 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 SPAM1P38567 509 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PTSQ03393 145 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 LRRC66Q68CR7 880 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 BRICD5Q6PL45 260 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 Q6ZVU0 165 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 MRGPRX3Q96LB0 322 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 KCNA7Q96RP8 456 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PCDHAC1Q9H158 963 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 TUBB1Q9H4B7 451 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 MARK1Q9P0L2 795 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 SLC25A13Q9UJS0 675 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 ZNF225Q9UK10 706 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 RWDD3Q9Y3V2 267 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 PTGDR2Q9Y5Y4 395 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 GBF1Q92538 1859 aa10.58□□□□□ -0.72
CLIP1-210ENST00000538120 NCF1BA6NI72 391 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 SYCE1LA8MT33 242 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 PRSS47A8MTI9 375 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 NCF1CA8MVU1 366 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 GRXCR1A8MXD5 290 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 ACOT8O14734 319 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 AZIN1O14977 448 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 XYLBO75191 536 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 HSPA1AP0DMV8 641 aaKnown RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 HSPA1BP0DMV9 641 aaKnown RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 NCF1P14598 390 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 ZNF7P17097 686 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-210ENST00000538120 ITGB6P18564 788 aa10.57□□□□□ -0.72
CLIP1-210ENST00000538120 ITGALP20701 1170 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms