RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	DCTN2	Q13561	401 aa	Known RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ITPRIPL2	Q3MIP1	535 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ANXA2R	Q3ZCQ2	193 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ARL13A	Q5H913	290 aa	Predicted RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CELF3	Q5SZQ8	465 aa	Known RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	MARCH8	Q5T0T0	291 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SERPINA13P	Q6UXR4	307 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SLC36A4	Q6YBV0	504 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	MIGA1	Q8NAN2	632 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	OR52N4	Q8NGI2	321 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	KIF1BP	Q96EK5	621 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CHFR	Q96EP1	664 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	PERP	Q96FX8	193 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	RITA1	Q96K30	269 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SDF4	Q9BRK5	362 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	FRMD8	Q9BZ67	464 aa	Predicted RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TRPV4	Q9HBA0	871 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442		Q9N2J8	555 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TBC1D13	Q9NVG8	400 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SH3BP4	Q9P0V3	963 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ZNF215	Q9UL58	517 aa	Predicted RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SATB2	Q9UPW6	733 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ZNF106	Q9H2Y7	1883 aa	Known RBP	4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	KAT6A	Q92794	2004 aa		4.6	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TCRBV7S3A2	A0A539	114 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CDRT15L2	A8MXV6	281 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TARM1	B6A8C7	271 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	KCNJ18	B7U540	433 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TMEM232	C9JQI7	657 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CCNT1	O60563	726 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CIAO1	O76071	339 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SCGB1D1	O95968	90 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	PSMA4	P25789	261 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ITGA3	P26006	1051 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ABCD1	P33897	745 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CLNS1A	P54105	237 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CACNA2D1	P54289	1103 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	NAP1L1	P55209	391 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	EFNB1	P98172	346 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	MVP	Q14764	893 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	PFKFB3	Q16875	520 aa	Predicted RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	FAM43B	Q6ZT52	329 aa	Predicted RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	HAUS6	Q7Z4H7	955 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	NEK8	Q86SG6	692 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	AMIGO2	Q86SJ2	522 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	VASH2	Q86V25	355 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SCAI	Q8N9R8	606 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	NEU4	Q8WWR8	484 aa	Predicted RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CUL5	Q93034	780 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ZNF764	Q96H86	408 aa	Predicted RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	UROC1	Q96N76	676 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CENPO	Q9BU64	300 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TM2D2	Q9BX73	214 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	CXXC4	Q9H2H0	198 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	RANBP17	Q9H2T7	1088 aa	Known RBP	4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	ARL8B	Q9NVJ2	186 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	SLC17A6	Q9P2U8	582 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	NLK	Q9UBE8	527 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	HSPB7	Q9UBY9	170 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	TBC1D29	Q9UFV1	150 aa		4.59	□□□□□ -1.67
ECHDC1-223	ENST00000534442	KNL1	Q8NG31	2342 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	TRRAP	Q9Y4A5	3859 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442		A0A1B0GVT2	93 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442		A0A1W2PNU3	283 aa	Predicted RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	INAFM1	C9JVW0	142 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	POC1B-GALNT4	F8VUJ3	575 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	CEP104	O60308	925 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	TIPRL	O75663	272 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	HSP90AA1	P07900	732 aa	Known RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ACADM	P11310	421 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	UBA1	P22314	1058 aa	Known RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	HOXD13	P35453	343 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	MLH1	P40692	756 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	CCR2	P41597	374 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ARF3	P61204	181 aa	Predicted RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ARF1	P84077	181 aa	Known RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	DEFA6	Q01524	100 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ILK	Q13418	452 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	STXBP2	Q15833	593 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ZNF362	Q5T0B9	420 aa	Predicted RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	AADACL2	Q6P093	401 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	TMEM81	Q6P7N7	255 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	CRIP3	Q6Q6R5	217 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	FAM228A	Q86W67	206 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	CHSY1	Q86X52	802 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	RPAP2	Q8IXW5	612 aa	Predicted RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	TMEM217	Q8N7C4	229 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ETNPPL	Q8TBG4	499 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ZFPM2	Q8WW38	1151 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	PIP5K1A	Q99755	562 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	P2RY13	Q9BPV8	354 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	HEMGN	Q9BXL5	484 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	CADM1	Q9BY67	442 aa	Known RBP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	SMYD2	Q9NRG4	433 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	ASB6	Q9NWX5	421 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	MCM9	Q9NXL9	1143 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	MPP6	Q9NZW5	540 aa		4.58	□□□□□ -1.68
ECHDC1-223	ENST00000534442	PEMT	Q9UBM1	199 aa		4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms