RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SLC5A10A0PJK1 596 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 TMEM202A6NGA9 273 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 NCF1BA6NI72 391 aaPredicted RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 NCF1CA8MVU1 366 aaPredicted RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 GPR89AB7ZAQ6 455 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 CHUKO15111 745 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 ZNF217O75362 1048 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 SNUPNO95149 360 aaKnown RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 S100BP04271 92 aaPredicted RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 C8GP07360 202 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 GPR89BP0CG08 455 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 NCF1P14598 390 aaPredicted RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 ARRB2P32121 409 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 HK3P52790 923 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 ALDH18A1P54886 795 aaKnown RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 VRK3Q8IV63 474 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 ZNF547Q8IVP9 402 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 SPEM1Q8N4L4 309 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 PJA1Q8NG27 643 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 FOXJ1Q92949 421 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 GLMNQ92990 594 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 CHRDQ9H2X0 955 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 FZD3Q9NPG1 666 aa20.63■□□□□ 0.89
VPS28-208ENST00000527797 UTP6Q9NYH9 597 aaKnown RBP20.63■□□□□ 0.89
VPS28-208ENST00000527797 STX16-NPEPL1H3BU86 382 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 STX16O14662 325 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 LIN7AO14910 233 aaPredicted RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 POP7O75817 140 aaKnown RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 PPP1R3AQ16821 1122 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 ARL13AQ5H913 290 aaPredicted RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 ATG14Q6ZNE5 492 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 GJD3Q8N144 294 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 PIWIL2Q8TC59 973 aaKnown RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 TOE1Q96GM8 510 aaKnown RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 ASB2Q96Q27 587 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 MYOCQ99972 504 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 APOOQ9BUR5 198 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 ILKAPQ9H0C8 392 aaPredicted RBP20.62■□□□□ 0.89
VPS28-208ENST00000527797 RDH14Q9HBH5 336 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 ARL2BPQ9Y2Y0 163 aa20.62■□□□□ 0.89
VPS28-208ENST00000527797 FPGTO14772 594 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 SLC16A5O15375 505 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 SUPT7LO94864 414 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 APBB3O95704 486 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 KITP10721 976 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 VCLP18206 1134 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 HNRNPA2B1P22626 353 aaKnown RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 RPS9P46781 194 aaKnown RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 PLOD1Q02809 727 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 SP140Q13342 867 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 ZNF658BQ4V348 819 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 UNC50Q53HI1 259 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 ZNF771Q7L3S4 317 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 LRRTM4Q86VH4 590 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 WDR75Q8IWA0 830 aaKnown RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 CFAP206Q8IYR0 622 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 OR2L2Q8NH16 312 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 ASB11Q8WXH4 323 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 EML4Q9HC35 981 aaKnown RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 WSB2Q9NYS7 404 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 MARCOQ9UEW3 520 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 RAP2CQ9Y3L5 183 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 DNMT3AQ9Y6K1 912 aaPredicted RBP20.61■□□□□ 0.89
VPS28-208ENST00000527797 TRPM6Q9BX84 2022 aa20.61■□□□□ 0.89
VPS28-208ENST00000527797 MGAT4DA6NG13 374 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 CACNB4O00305 520 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 FFAR2O15552 330 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 LATO43561 262 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 CHRNGP07510 517 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 ENO2P09104 434 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 EEF1DP29692 281 aaKnown RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 CD6P30203 668 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 CCR10P46092 362 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 NAA20P61599 178 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 ARHGAP8P85298 464 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PRKAA1Q13131 559 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PHKG1Q16816 387 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 KIAA0895LQ68EN5 471 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 FRMD7Q6ZUT3 714 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 UBE2R2Q712K3 238 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 LSMEM2Q8N112 164 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 RFWD2Q8NHY2 731 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 HM13Q8TCT9 377 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 TRMOQ9BU70 441 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 SLC12A9Q9BXP2 914 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 TRIM54Q9BYV2 358 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PNPOQ9NVS9 261 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 DCTN4Q9UJW0 460 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 SIT1Q9Y3P8 196 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PABPN1LA6NDY0 278 aaKnown RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 KMOO15229 486 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 GRID2O43424 1007 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 SIX3O95343 332 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 HOXC4P09017 264 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 AKT2P31751 481 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PREPP48147 710 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 CCR3P51677 355 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 CCR5P51681 352 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 SETDB1Q15047 1291 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 ZSCAN26Q16670 478 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms