RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 LYPLA1O75608 230 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 IDO1P14902 403 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CORO7P57737 925 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 NR6A1Q15406 480 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 GSTA3Q16772 222 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 UNC5DQ6UXZ4 953 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PIM3Q86V86 326 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PLD6Q8N2A8 252 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 SMRP1Q8NCR6 262 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 TNIP2Q8NFZ5 429 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MRGPRX3Q96LB0 322 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 EVA1BQ9NVM1 165 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ASF1AQ9Y294 204 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 TRBV5-4A0A0C4DH59 114 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SRFP11831 508 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 TEAD1P28347 426 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SERPINB1P30740 379 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PGM1P36871 562 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 RPL3P39023 403 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 CDKL1Q00532 357 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CNTN1Q12860 1018 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ABRQ12979 859 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ZNF678Q5SXM1 525 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 C9orf64Q5T6V5 341 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ASTLQ6HA08 431 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 ADAMTSL4Q6UY14 1074 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 RP9Q8TA86 221 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 EEF1AKMT1Q8WVE0 214 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ARRDC3Q96B67 414 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CXorf40BQ96DE9 158 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MED8Q96G25 268 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 RSPH9Q9H1X1 276 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 ANGPTL2Q9UKU9 493 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 C15orf38-AP3S2A0A0A6YYH1 394 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 TCRBV21S2A2A0A5A6 115 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MGAT4DA6NG13 374 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 BBIP1A8MTZ0 92 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 B2RBV5 119 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 E9PBE3 544 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 AURKAO14965 403 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PI15O43692 258 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 KLHL41O60662 606 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ULK1O75385 1050 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 GJB3O75712 270 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ARHGEF15O94989 841 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CLDN9O95484 217 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CD160O95971 181 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CTSEP14091 401 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MPSTP25325 297 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 XIAPP98170 497 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ZNF33BQ06732 778 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MLF2Q15773 248 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 HABP4Q5JVS0 413 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 CDHR3Q6ZTQ4 885 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 HSD11B1LQ7Z5J1 315 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ARPINQ7Z6K5 226 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CD200R1Q8TD46 325 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MIPEPQ99797 713 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SHCBP1LQ9BZQ2 653 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PNPOQ9NVS9 261 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ADGRE2Q9UHX3 823 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 A0A1W2PP55 124 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 NUAK1O60285 661 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 OR1I1O60431 355 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 PAPLNO95428 1278 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 DPTQ07507 201 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 ILF3Q12906 894 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP54-215ENST00000497106 SNCBQ16143 134 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 SLC44A4Q53GD3 710 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 COL13A1Q5TAT6 717 aaPredicted RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 PTCRAQ6ISU1 281 aaPredicted RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 CFAP206Q8IYR0 622 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 CENPLQ8N0S6 344 aaPredicted RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 OR2T34Q8NGX1 318 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 C19orf60Q96EN9 201 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 LMLNQ96KR4 655 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 UBXN10Q96LJ8 280 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 FAM161BQ96MY7 647 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 SLC32A1Q9H598 525 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 CACYBPQ9HB71 228 aaKnown RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 ZNF358Q9NW07 568 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 FADS3Q9Y5Q0 445 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 SGTAO43765 313 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 UNC5CO95185 931 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 ZXDBP98169 803 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 PTSQ03393 145 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 HERC3Q15034 1050 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 TGFBIQ15582 683 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 IL27RAQ6UWB1 636 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 FAM124AQ86V42 546 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 C11orf74Q86VG3 221 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 ZNF382Q96SR6 550 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 C12orf65Q9H3J6 166 aaKnown RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 CCDC177Q9NQR7 707 aaPredicted RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 DMTF1Q9Y222 760 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 C17orf113A0A1B0GUU1 675 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 PRRT4C9JH25 899 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 POP7O75817 140 aaKnown RBP8.22□□□□□ -1.09
USP54-215ENST00000497106 HNF4AP41235 474 aa8.22□□□□□ -1.09
USP54-215ENST00000497106 PRLHRP49683 370 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms