RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	TIMM44	O43615	452 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	GPR137B	O60478	399 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	LDLR	P01130	860 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	MAP2K2	P36507	400 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	CASP2	P42575	452 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	PSMC4	P43686	418 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	THOP1	P52888	689 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	DRG2	P55039	364 aa	Known RBP	5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	PRKAA1	Q13131	559 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	KCTD2	Q14681	263 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	DENND5B	Q6ZUT9	1274 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	FASTKD5	Q7L8L6	764 aa	Known RBP	5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	GALNT5	Q7Z7M9	940 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	CRYBG2	Q8N1P7	616 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	ADAD2	Q8NCV1	583 aa	Known RBP	5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	OR2T12	Q8NG77	320 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	DACH2	Q96NX9	599 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	ANP32E	Q9BTT0	268 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	SLA2	Q9H6Q3	261 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458	SMARCA4	P51532	1647 aa		5.19	□□□□□ -1.58
SF3B1-212	ENST00000496458		A6NL46	340 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	NDUFS4	O43181	175 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	PTP4A3	O75365	173 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	BAIAP3	O94812	1187 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	GNB3	P16520	340 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	COPB2	P35606	906 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	POU5F1	Q01860	360 aa	Known RBP	5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	KCNC3	Q14003	757 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	DLG2	Q15700	870 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	ALS2CL	Q60I27	953 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	ADAL	Q6DHV7	355 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	KLC3	Q6P597	504 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	MFSD6	Q6ZSS7	791 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	ADGRF2	Q8IZF7	708 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	L3MBTL4	Q8NA19	623 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	TBC1D16	Q8TBP0	767 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	TMEM190	Q8WZ59	177 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	NAP1L5	Q96NT1	182 aa	Predicted RBP	5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	RHNO1	Q9BSD3	238 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	PELI2	Q9HAT8	420 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	ECHDC1	Q9NTX5	307 aa		5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	INTS10	Q9NVR2	710 aa	Known RBP	5.18	□□□□□ -1.58
SF3B1-212	ENST00000496458	MROH2B	Q7Z745	1585 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	PTGES3L	E9PB15	166 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	AP3D1	O14617	1153 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SLC22A2	O15244	555 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	RSL1D1	O76021	490 aa	Known RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	H1F0	P07305	194 aa	Known RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	LIF	P15018	202 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	VEGFC	P49767	419 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SNRPE	P62304	92 aa	Known RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	FCN2	Q15485	313 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SH2D5	Q6ZV89	423 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	NOTCH2NL	Q7Z3S9	236 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	PLD3	Q8IV08	490 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	GPALPP1	Q8IXQ4	340 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	C1orf131	Q8NDD1	294 aa	Known RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	DAZL	Q92904	295 aa	Known RBP	5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SLC47A1	Q96FL8	570 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SLC22A12	Q96S37	553 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	GFRA4	Q9GZZ7	299 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SMARCAD1	Q9H4L7	1026 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	SIX2	Q9NPC8	291 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	TAS2R14	Q9NYV8	317 aa		5.17	□□□□□ -1.58
SF3B1-212	ENST00000496458	ATAD2B	Q9ULI0	1458 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	OR6C76	A6NM76	312 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	MAGEB17	A8MXT2	336 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	CDRT15L2	A8MXV6	281 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	CSPG5	O95196	566 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	ZNF883	P0CG24	379 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	ACP2	P11117	423 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	RPS18	P62269	152 aa	Known RBP	5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	PLA2G7	Q13093	441 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	KIAA1644	Q3SXP7	199 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	GCNT6	Q5T4J0	391 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	FAM109B	Q6ICB4	259 aa	Predicted RBP	5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	ZNF790	Q6PG37	636 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	C1orf122	Q6ZSJ8	110 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	ISCA2	Q86U28	154 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	CNPY4	Q8N129	248 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	WDR20	Q8TBZ3	569 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	HRH4	Q9H3N8	390 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	OLFML3	Q9NRN5	406 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	AMACR	Q9UHK6	382 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	KCNJ14	Q9UNX9	436 aa		5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	EXO1	Q9UQ84	846 aa	Known RBP	5.16	□□□□□ -1.58
SF3B1-212	ENST00000496458	MITF	O75030	526 aa	Predicted RBP	5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	RNF224	P0DH78	156 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	MMP9	P14780	707 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	PRLR	P16471	622 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	CDH11	P55287	796 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	MRPS5	P82675	430 aa	Known RBP	5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	KRT33B	Q14525	404 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	IRF3	Q14653	427 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	MCEMP1	Q8IX19	187 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF843	Q8N446	348 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	WBP1	Q96G27	269 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	CEP295NL	Q96MC4	621 aa		5.15	□□□□□ -1.59
SF3B1-212	ENST00000496458	CHCHD6	Q9BRQ6	235 aa		5.15	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms