RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 IMP3Q9NV31 184 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 WHRNQ9P202 907 aa15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 GNPTGQ9UJJ9 305 aa15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 UTP11Q9Y3A2 253 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 MRFAP1Q9Y605 127 aa15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CFAP20Q9Y6A4 193 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PRAMEF33A0A0G2JMD5 474 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 UBA6A0AVT1 1052 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TRABD2BA6NFA1 517 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 C1QTNF9BB2RNN3 333 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TMX2-CTNND1H3BSU7 103 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TTC4O95801 387 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 C1QTNF9P0C862 333 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 RPS3P23396 243 aaKnown RBP eCLIP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CCKBRP32239 447 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CSF2RBP32927 897 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 MAPK9P45984 424 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PREPP48147 710 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CALCOCO2Q13137 446 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SQSTM1Q13501 440 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 GPR18Q14330 331 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SYTL3Q4VX76 610 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SPANXN3Q5MJ09 141 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 DUPD1Q68J44 220 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ZNF470Q6ECI4 717 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PTRHD1Q6GMV3 140 aaKnown RBP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CAPRIN2Q6IMN6 1127 aaKnown RBP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 USP53Q70EK8 1073 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TMPRSS9Q7Z410 1059 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CILP2Q8IUL8 1156 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SPDYE1Q8NFV5 336 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 LRRC39Q96DD0 335 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 NXPE2Q96DL1 559 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ATXN7L3BQ96GX2 97 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 DPYSL5Q9BPU6 564 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CARD6Q9BX69 1037 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 NRSN2Q9GZP1 204 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 P2RY12Q9H244 342 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 OR52A5Q9H2C5 316 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 EPB41L1Q9H4G0 881 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 RDH14Q9HBH5 336 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 C20orf96Q9NUD7 363 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 HEBP2Q9Y5Z4 205 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 FAM169AQ9Y6X4 670 aa15.92■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 IQCF5A8MTL0 148 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 IFRD1O00458 451 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ITGB6P18564 788 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PDHA2P29803 388 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ELK3P41970 407 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 EIF3BP55884 814 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PLOD1Q02809 727 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ZFP36L1Q07352 338 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 BOP1Q14137 746 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 BRD3Q15059 726 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 C8orf74Q6P047 294 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 DUS1LQ6P1R4 473 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 KCNMB4Q86W47 210 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 IGDCC3Q8IVU1 814 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SLITRK4Q8IW52 837 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 LMNTD2Q8IXW0 634 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 LKAAEAR1Q8TD35 194 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CALML6Q8TD86 181 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 LPGAT1Q92604 370 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 LIN37Q96GY3 246 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PANX3Q96QZ0 392 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 FAM167BQ9BTA0 163 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 STRADBQ9C0K7 418 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 EPB41L5Q9HCM4 733 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 INTS10Q9NVR2 710 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 GRHL1Q9NZI5 618 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CHMP2BQ9UQN3 213 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 VPS9D1Q9Y2B5 631 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TEX264Q9Y6I9 313 aa15.91■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CCDC187A0A096LP49 1063 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SLC5A10A0PJK1 596 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 UBXN7O94888 489 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PROS1P07225 676 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 NDUFS1P28331 727 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CD151P48509 253 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CFHR1Q03591 330 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 RTP5Q14D33 572 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CTSL3PQ5NE16 218 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 HP1BP3Q5SSJ5 553 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PHF19Q5T6S3 580 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TMEM71Q6P5X7 295 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 WDR74Q6RFH5 385 aaPredicted RBP15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 NAPRTQ6XQN6 538 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CENPUQ71F23 418 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 PDZD3Q86UT5 571 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 KRT222Q8N1A0 295 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 MNS1Q8NEH6 495 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 OR4D9Q8NGE8 314 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 ZFPM2Q8WW38 1151 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 NCSTNQ92542 709 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 TMEM159Q96B96 161 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CFAP36Q96G28 342 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CNTNAP3BQ96NU0 1288 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 WDR83Q9BRX9 315 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 CNTNAP3Q9BZ76 1288 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 SEMA6CQ9H3T2 930 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms