RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CD320Q9NPF0 282 aa21.25■□□□□ 0.99
SMC4-221ENST00000489573 FAM8A1Q9UBU6 413 aa21.25■□□□□ 0.99
SMC4-221ENST00000489573 OARD1Q9Y530 152 aa21.25■□□□□ 0.99
SMC4-221ENST00000489573 SLC5A10A0PJK1 596 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 LATO43561 262 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 TGDSO95455 350 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 HSPA4LO95757 839 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 TROVE2P10155 538 aaKnown RBP eCLIP21.24■□□□□ 0.991e-12■■■■■ 61.2
SMC4-221ENST00000489573 IMPDH1P20839 514 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 HNRNPA2B1P22626 353 aaKnown RBP21.24■□□□□ 0.99
SMC4-221ENST00000489573 CD6P30203 668 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 ARRB2P32121 409 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 SERPINB5P36952 375 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 HK3P52790 923 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 TGFBIQ15582 683 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 PPP1R3AQ16821 1122 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 PFKFB4Q16877 469 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 ZNF658BQ4V348 819 aaPredicted RBP21.24■□□□□ 0.99
SMC4-221ENST00000489573 CFAP157Q5JU67 520 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 SKA2Q8WVK7 121 aaPredicted RBP21.24■□□□□ 0.99
SMC4-221ENST00000489573 L3HYPDHQ96EM0 354 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 SORT1Q99523 831 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 APOOQ9BUR5 198 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 TPSD1Q9BZJ3 242 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 WSB2Q9NYS7 404 aaPredicted RBP21.24■□□□□ 0.99
SMC4-221ENST00000489573 CD274Q9NZQ7 290 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 ADAMTS6Q9UKP5 1117 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 SIT1Q9Y3P8 196 aa21.24■□□□□ 0.99
SMC4-221ENST00000489573 C17orf113A0A1B0GUU1 675 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 CACNB4O00305 520 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 FPGTO14772 594 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 LIN7AO14910 233 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 SNX2O60749 519 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 POP7O75817 140 aaKnown RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 C8GP07360 202 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 CCR5P51681 352 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 HERVK_113P63132 956 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 ZXDAP98168 799 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 SF3A3Q12874 501 aaKnown RBP eCLIP21.23■□□□□ 0.994e-10■■■■■ 210.9
SMC4-221ENST00000489573 KIAA0895LQ68EN5 471 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 LRRTM4Q86VH4 590 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 SEC16BQ96JE7 1060 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 ERVK-6Q9BXR3 956 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 C6orf106Q9H6K1 298 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 ACSS2Q9NR19 701 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 NCF1BA6NI72 391 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 NCF1CA8MVU1 366 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 STX16-NPEPL1H3BU86 382 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 STX16O14662 325 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 S100BP04271 92 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 NCF1P14598 390 aaPredicted RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 AKT2P31751 481 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 MTAPQ13126 283 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 SP140Q13342 867 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 PLA2G4EQ3MJ16 856 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 ZNF678Q5SXM1 525 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 CACNA2D3Q8IZS8 1091 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 OR2L2Q8NH16 312 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 HM13Q8TCT9 377 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 MOCOSQ96EN8 888 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 THOC1Q96FV9 657 aaKnown RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 CNDP1Q96KN2 507 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 TRIM55Q9BYV6 548 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 COG4Q9H9E3 785 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 NPHS2Q9NP85 383 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 UTP6Q9NYH9 597 aaKnown RBP21.23■□□□□ 0.99
SMC4-221ENST00000489573 KLHL14Q9P2G3 628 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 GULP1Q9UBP9 304 aa21.23■□□□□ 0.99
SMC4-221ENST00000489573 MGAT4DA6NG13 374 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 SLC16A5O15375 505 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 GRID2O43424 1007 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 HOXC4P09017 264 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 ENO2P09104 434 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 PREPP48147 710 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 ALDH18A1P54886 795 aaKnown RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 KIAA1024LP59773 190 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 ARHGAP8P85298 464 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 PLOD1Q02809 727 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 PHKG1Q16816 387 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 ATG14Q6ZNE5 492 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 C11orf96Q7Z7L8 435 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 SLC22A15Q8IZD6 547 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 LILRA3Q8N6C8 439 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 CCDC197Q8NCU1 140 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 DLG3Q92796 817 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 IER2Q9BTL4 223 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 RDH14Q9HBH5 336 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 DNAJC16Q9Y2G8 782 aa21.22■□□□□ 0.99
SMC4-221ENST00000489573 PCYT1BQ9Y5K3 369 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 DNMT3AQ9Y6K1 912 aaPredicted RBP21.22■□□□□ 0.99
SMC4-221ENST00000489573 IGHV1OR15-9A0A0B4J2B8 117 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 FFAR2O15552 330 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 FSBPO95073 299 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 SNUPNO95149 360 aaKnown RBP21.21■□□□□ 0.99
SMC4-221ENST00000489573 DCNP07585 359 aaKnown RBP21.21■□□□□ 0.99
SMC4-221ENST00000489573 VCLP18206 1134 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 CLDN2P57739 230 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 SETDB1Q15047 1291 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 UNC50Q53HI1 259 aa21.21■□□□□ 0.99
SMC4-221ENST00000489573 ARL13AQ5H913 290 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms