RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 CACUL1Q86Y37 369 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 GPSM1Q86YR5 675 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 NXPE1Q8N323 547 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 BEND7Q8N7W2 519 aaPredicted RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 FAM156AQ8NDB6 213 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 FGF13Q92913 245 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 C19orf60Q96EN9 201 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 VCX3AQ9NNX9 186 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 DHRS7Q9Y394 339 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 C8BP07358 591 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 ZNF7P17097 686 aaPredicted RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 ARL1P40616 181 aaPredicted RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 MAPK8P45983 427 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 DGKGP49619 791 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 ACADVLP49748 655 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 ATP4BP51164 291 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 SH3BGRP55822 239 aaPredicted RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 TRAP1Q12931 704 aaKnown RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 RBBP5Q15291 538 aaKnown RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 SYVN1Q86TM6 617 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 NKAPQ8N5F7 415 aaKnown RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 TMEM102Q8N9M5 508 aaPredicted RBP14.22□□□□□ -0.13
CHD3-211ENST00000481999 TWIST2Q8WVJ9 160 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 AKTIPQ9H8T0 292 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 UBAP1Q9NZ09 502 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 TBC1D14Q9P2M4 693 aa14.22□□□□□ -0.13
CHD3-211ENST00000481999 TRBV5-4A0A0C4DH59 114 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 FBP2O00757 339 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 LINC01565O15544 149 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 RNASEH2AO75792 299 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 SMIM18P0DKX4 95 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ADH5P11766 374 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ADARP55265 1226 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 DYNC1I2Q13409 638 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 PAOXQ6QHF9 649 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 HACD2Q6Y1H2 254 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 RBFAQ8N0V3 343 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 AHI1Q8N157 1196 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ISG20Q96AZ6 181 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 MCCC1Q96RQ3 725 aaPredicted RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 GDF15Q99988 308 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 APPL1Q9UKG1 709 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 PCTPQ9UKL6 214 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 VPS9D1Q9Y2B5 631 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 AP4S1Q9Y587 144 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 COMMD10Q9Y6G5 202 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 F5P12259 2224 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ZNF106Q9H2Y7 1883 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 E2F3O00716 465 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 MRASO14807 208 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 TNFAIP8O95379 198 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 RPS17P08708 135 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 CISD3P0C7P0 127 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 PFKLP17858 780 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 RPL5P46777 297 aaKnown RBP14.21□□□□□ -0.13
CHD3-211ENST00000481999 ATP6V0D1P61421 351 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 RHDQ02161 417 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 PLA2G4EQ3MJ16 856 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 SLC44A4Q53GD3 710 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 LARP4Q71RC2 724 aaKnown RBP eCLIP14.21□□□□□ -0.13
CHD3-211ENST00000481999 NUDT8Q8WV74 236 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ASB2Q96Q27 587 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 LYSMD1Q96S90 227 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 PCDH12Q9NPG4 1184 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 ELOVL2Q9NXB9 296 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 CIDEBQ9UHD4 219 aa14.21□□□□□ -0.13
CHD3-211ENST00000481999 H0YJX3 145 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 AZIN1O14977 448 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 KATNA1O75449 491 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 RECQLP46063 649 aaPredicted RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 PIK3CGP48736 1102 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 STX1BP61266 288 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 YBX1P67809 324 aaKnown RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 C11orf91Q3C1V1 193 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 SAMD4BQ5PRF9 694 aaKnown RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 IL23RQ5VWK5 629 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 RAB44Q7Z6P3 723 aaPredicted RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 VRK3Q8IV63 474 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 CELF5Q8N6W0 485 aaKnown RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 CDYL2Q8N8U2 506 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.2□□□□□ -0.14
CHD3-211ENST00000481999 CNBD2Q96M20 576 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 SLC39A3Q9BRY0 314 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 CPEB1Q9BZB8 566 aaKnown RBP14.2□□□□□ -0.14
CHD3-211ENST00000481999 ZNF696Q9H7X3 374 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 CROTQ9UKG9 612 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 COQ6Q9Y2Z9 468 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 RWDD3Q9Y3V2 267 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 LAMA1P25391 3075 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 COL6A3P12111 3177 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 PFDN6O15212 129 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 NRP2O60462 931 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 SNX2O60749 519 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 OR4F21O95013 312 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 CLPTM1O96005 669 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 CCR7P32248 378 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 HSPA7P48741 367 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 SPINT3P49223 89 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 LCP2Q13094 533 aa14.2□□□□□ -0.14
CHD3-211ENST00000481999 RBBP7Q16576 425 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms