RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	GFER	P55789	205 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CFHR1	Q03591	330 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	VAC14	Q08AM6	782 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CLN3	Q13286	438 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	SQSTM1	Q13501	440 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	SEMA5A	Q13591	1074 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	BOP1	Q14137	746 aa	Known RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	BRD3	Q15059	726 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TGIF1	Q15583	401 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TRIP13	Q15645	432 aa	Predicted RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	BCL7A	Q4VC05	210 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	ANKS6	Q68DC2	871 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	DUS1L	Q6P1R4	473 aa	Known RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CASC4	Q6P4E1	433 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CYB5D1	Q6P9G0	228 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	PCSK4	Q6UW60	755 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	HOOK3	Q86VS8	718 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	OOSP2	Q86WS3	158 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	RASGRP3	Q8IV61	690 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	LSM14A	Q8ND56	463 aa	Known RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	GPR150	Q8NGU9	434 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	ELMO1	Q92556	727 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	RSC1A1	Q92681	617 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	PBK	Q96KB5	322 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CTRC	Q99895	268 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	C19orf43	Q9BQ61	176 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	CCM2	Q9BSQ5	444 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TSSK1B	Q9BXA7	367 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TLR10	Q9BXR5	811 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	UCK1	Q9HA47	277 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	SLC40A1	Q9NP59	571 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	BFAR	Q9NZS9	450 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	DRG1	Q9Y295	367 aa	Known RBP	11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	B3GALT1	Q9Y5Z6	326 aa		11.28	□□□□□ -0.6
CPNE1-222	ENST00000473373	OR51F1	A6NGY5	319 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	C9orf172	C9J069	976 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373		H7C0S8	307 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	POLR1C	O15160	346 aa	Predicted RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	MAP3K7	O43318	606 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	GOT2	P00505	430 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR56A5	P0C7T3	313 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	PRSS56	P0CW18	603 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	NDUFS1	P28331	727 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	RPL22	P35268	128 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	NSG1	P42857	185 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	CAPZB	P47756	277 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	AARS2	Q5JTZ9	985 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	TSTD2	Q5T7W7	516 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	LYPLAL1	Q5VWZ2	237 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	METRNL	Q641Q3	311 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	NLRP9	Q7RTR0	991 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	VASH2	Q86V25	355 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	SLC35F6	Q8N357	371 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	GSDMB	Q8TAX9	411 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	HDAC10	Q969S8	669 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	MAGOHB	Q96A72	148 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	ELMO2	Q96JJ3	720 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	C9orf72	Q96LT7	481 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	TEFM	Q96QE5	360 aa	Known RBP	11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	ARHGAP9	Q9BRR9	750 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	DDA1	Q9BW61	102 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	AP1M1	Q9BXS5	423 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	COG4	Q9H9E3	785 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	SOHLH2	Q9NX45	425 aa		11.27	□□□□□ -0.61
CPNE1-222	ENST00000473373	AHCTF1	Q8WYP5	2266 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CFAP46	Q8IYW2	2715 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CCDC162P	A2VCL2	907 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	GSAP	A4D1B5	854 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CYSRT1	A8MQ03	144 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373		B4E171	279 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	PGRMC1	O00264	195 aa	Known RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	SUN1	O94901	812 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	AP2A2	O94973	939 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	KRT14	P02533	472 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	ITGB6	P18564	788 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	TSPAN7	P41732	249 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	GRIA1	P42261	906 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	LEPR	P48357	1165 aa	Known RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	ARCN1	P48444	511 aa	Known RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CSE1L	P55060	971 aa	Known RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	GPS1	Q13098	491 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	ITIH4	Q14624	930 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	DBN1	Q16643	649 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	PCID2	Q5JVF3	399 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	DRICH1	Q6PGQ1	229 aa	Predicted RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	KLHDC8B	Q8IXV7	354 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CACNA2D3	Q8IZS8	1091 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	CLDN19	Q8N6F1	224 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	GLIS1	Q8NBF1	620 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	SIDT2	Q8NBJ9	832 aa	Known RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR4L1	Q8NH43	312 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	GRK7	Q8WTQ7	553 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	RNF31	Q96EP0	1072 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	OR6C1	Q96RD1	312 aa		11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	INSM2	Q96T92	566 aa	Predicted RBP	11.26	□□□□□ -0.61
CPNE1-222	ENST00000473373	ZPBP	Q9BS86	351 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms