RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CCNYL1Q8N7R7 359 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 PTGR2Q8N8N7 351 aaPredicted RBP12.6□□□□□ -0.39
VPS13D-205ENST00000473099 PDPRQ8NCN5 879 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 HM13Q8TCT9 377 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 C10orf82Q8WW14 230 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 STON2Q8WXE9 905 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 EXT2Q93063 718 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 PHF21BQ96EK2 531 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 FAR2Q96K12 515 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 NECAB3Q96P71 396 aaPredicted RBP12.6□□□□□ -0.39
VPS13D-205ENST00000473099 TMEM237Q96Q45 408 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 SORT1Q99523 831 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 IER2Q9BTL4 223 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 WWP1Q9H0M0 922 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 SLC6A17Q9H1V8 727 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 WDR26Q9H7D7 661 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 RMI1Q9H9A7 625 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 CD274Q9NZQ7 290 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 VTI1BQ9UEU0 232 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 DNAJC16Q9Y2G8 782 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 STK38LQ9Y2H1 464 aa12.6□□□□□ -0.39
VPS13D-205ENST00000473099 NCOR1O75376 2440 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 SLC5A10A0PJK1 596 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 KRBA1A5PL33 1030 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 NEMP2A6NFY4 417 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 TOR1BO14657 336 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CHUKO15111 745 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ITM2AO43736 263 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 KCNJ13O60928 360 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ZNF217O75362 1048 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 PAK4O96013 591 aaPredicted RBP12.59□□□□□ -0.39
VPS13D-205ENST00000473099 MYCLP1P12525 358 aaPredicted RBP12.59□□□□□ -0.39
VPS13D-205ENST00000473099 VCLP18206 1134 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CYP2A7P20853 494 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 KCNC1P48547 511 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ARFIP2P53365 341 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CTSCP53634 463 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 AP1S2P56377 157 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 HSPA14Q0VDF9 509 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 OVGP1Q12889 678 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 SETDB1Q15047 1291 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 PFKFB4Q16877 469 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CES4AQ5XG92 561 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ANKS6Q68DC2 871 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CYHR1Q6ZMK1 362 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 LRRTM4Q86VH4 590 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 TRAPPC5Q8IUR0 188 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 PELI3Q8N2H9 469 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 PGBD3Q8N328 593 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 TSTD1Q8NFU3 115 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 HMGB4Q8WW32 186 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 FOPNLQ96NB1 174 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 OR2AG1Q9H205 316 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 CYP4F12Q9HCS2 524 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ATXN10Q9UBB4 475 aa12.59□□□□□ -0.39
VPS13D-205ENST00000473099 ATXN2Q99700 1313 aaKnown RBP12.59□□□□□ -0.39
VPS13D-205ENST00000473099 PRR23AA6NEV1 266 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 MGAT4DA6NG13 374 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 FAM170BA6NMN3 283 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 CACNB4O00305 520 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 FFAR2O15552 330 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 LILRB5O75023 590 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 LYPLA1O75608 230 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 SUPT7LO94864 414 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 SEMA4FO95754 770 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 MLYCDO95822 493 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 RPS17P08708 135 aaKnown RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 ANXA5P08758 320 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 HIST1H2AGP0C0S8 130 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 ALOX15P16050 662 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 HIST1H2ADP20671 130 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 KELP23276 732 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 HNMTP50135 292 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 RPL14P50914 215 aaKnown RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 CCR5P51681 352 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 RPA4Q13156 261 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 FGL2Q14314 439 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 INPP5AQ14642 412 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 PPP1R3AQ16821 1122 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 ARL13AQ5H913 290 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 SULT1C3Q6IMI6 304 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 Q6ZS52 159 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 SLC22A15Q8IZD6 547 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 GJD3Q8N144 294 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 GBP7Q8N8V2 638 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 PLA2G15Q8NCC3 412 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 OR2L2Q8NH16 312 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 MCOLN3Q8TDD5 553 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 ASB11Q8WXH4 323 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 HIST1H2AHQ96KK5 128 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 HIST1H2AJQ99878 128 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 H2AFJQ9BTM1 129 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 SLC12A9Q9BXP2 914 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 C20orf27Q9GZN8 174 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 DPEP2Q9H4A9 486 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 GSTO2Q9H4Y5 243 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 PARVBQ9HBI1 364 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 CDYLQ9Y232 598 aa12.58□□□□□ -0.4
VPS13D-205ENST00000473099 APOBEC2Q9Y235 224 aaKnown RBP12.58□□□□□ -0.4
VPS13D-205ENST00000473099 A0A0G2JND7 137 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms