RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 CRB3Q9BUF7 120 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 DDX23Q9BUQ8 820 aaKnown RBP6.33□□□□□ -1.4
PTCD3-208ENST00000469585 ALG8Q9BVK2 526 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 RETREG1Q9H6L5 497 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 CATSPERBQ9H7T0 1116 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 HPS4Q9NQG7 708 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 OSER1Q9NX31 292 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 PLK2Q9NYY3 685 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 DKK3Q9UBP4 350 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 NOCTQ9UK39 431 aaKnown RBP6.33□□□□□ -1.4
PTCD3-208ENST00000469585 GMEB2Q9UKD1 530 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 LRCH1Q9Y2L9 728 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 MIA3Q5JRA6 1907 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 DENND4CQ5VZ89 1909 aa6.33□□□□□ -1.4
PTCD3-208ENST00000469585 OBSL1O75147 1896 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 DOCK6Q96HP0 2047 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 NOTCH4Q99466 2003 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TTC28Q96AY4 2481 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 EYSQ5T1H1 3165 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SIGLEC16A6NMB1 481 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 EPHB6O15197 1021 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ZNF217O75362 1048 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 RHOBTB1O94844 696 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 KLF8O95600 359 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ESRRBO95718 433 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PDGFBP01127 241 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 EGFP01133 1207 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PTMAP06454 111 aaKnown RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 CHRM2P08172 466 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 H2AFZP0C0S5 128 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 HOXB2P14652 356 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 OR1E1P30953 314 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 NTSR1P30989 418 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 UQCRC1P31930 480 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 HTR7P34969 479 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ADRA1BP35368 520 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PRKCIP41743 596 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 DPP6P42658 865 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PTPN9P43378 593 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 VCPP55072 806 aaKnown RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 GSCP56915 257 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 GSDMDP57764 484 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TIAL1Q01085 375 aaKnown RBP eCLIP6.32□□□□□ -1.45e-7■■■■□ 26.5
PTCD3-208ENST00000469585 MTAPQ13126 283 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PIGHQ14442 188 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 KRT72Q14CN4 511 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TBCCQ15814 346 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TTC31Q49AM3 519 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 RAP1GAP2Q684P5 730 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ALKBH5Q6P6C2 394 aaKnown RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 H2AFVQ71UI9 128 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 CHST9Q7L1S5 443 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SYT13Q7L8C5 426 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 STRADAQ7RTN6 431 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SLFN11Q7Z7L1 901 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TMEM25Q86YD3 366 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 VSTM4Q8IW00 320 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 MAP7D3Q8IWC1 876 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SYTL1Q8IYJ3 562 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 MCOLN2Q8IZK6 566 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TMEM105Q8N8V8 129 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 BEND2Q8NDZ0 799 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 GANCQ8TET4 914 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 FAM172AQ8WUF8 416 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 NSMCE1Q8WV22 266 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 RXFP2Q8WXD0 754 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 RSPRY1Q96DX4 576 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PGAP3Q96FM1 320 aaPredicted RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 PBKQ96KB5 322 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 CFAP57Q96MR6 1250 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 HAPLN3Q96S86 360 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 CNPY3Q9BT09 278 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 KRTAP9-3Q9BYQ3 159 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TKTL2Q9H0I9 626 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ZWILCHQ9H900 591 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 DYRK4Q9NR20 520 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 TM7SF3Q9NS93 570 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 CNOT8Q9UFF9 292 aaKnown RBP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SUN2Q9UH99 717 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 GGA2Q9UJY4 613 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 VPS28Q9UK41 221 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 NCKAP1Q9Y2A7 1128 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SLC27A6Q9Y2P4 619 aa6.32□□□□□ -1.4
PTCD3-208ENST00000469585 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.32□□□□□ -1.4
PTCD3-208ENST00000469585 ANAPC1Q9H1A4 1944 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 UNC80Q8N2C7 3258 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 A0A087WV62 115 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 GOLGA6L3A6NEY3 463 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 F5H423 210 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-208ENST00000469585 AGPSO00116 658 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 FZD7O75084 574 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 PENKP01210 267 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-208ENST00000469585 IGLV3-27P01718 113 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 GYPCP04921 128 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 RHOCP08134 193 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 CHRNB1P11230 501 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 SKILP12757 684 aa6.31□□□□□ -1.4
PTCD3-208ENST00000469585 UNGP13051 313 aaPredicted RBP6.31□□□□□ -1.4
PTCD3-208ENST00000469585 HGFP14210 728 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms