RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ELMO1Q92556 727 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CCDC74AQ96AQ1 378 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 C9orf72Q96LT7 481 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 PANX3Q96QZ0 392 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 TSPYL1Q9H0U9 437 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 STN1Q9H668 368 aaKnown RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 SARS2Q9NP81 518 aaKnown RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 FBXO6Q9NRD1 293 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 ZNF624Q9P2J8 865 aaPredicted RBP11.71□□□□□ -0.53
VPS13D-204ENST00000469054 CPNE7Q9UBL6 633 aa11.71□□□□□ -0.53
VPS13D-204ENST00000469054 COL5A1P20908 1838 aaPredicted RBP11.71□□□□□ -0.54
VPS13D-204ENST00000469054 SLC5A10A0PJK1 596 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 OR52A4PA6NMU1 304 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 HAUS5O94927 633 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 VIPP01282 170 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 GSTA2P09210 222 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 PKMP14618 531 aaKnown RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 ITGB6P18564 788 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 PDHA2P29803 388 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 SSTR1P30872 391 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 CCR7P32248 378 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 SLC19A1P41440 591 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 LEPRP48357 1165 aaKnown RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 UBE2IP63279 158 aaKnown RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 MGAT5Q09328 741 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 RPE65Q16518 533 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 CAPRIN2Q6IMN6 1127 aaKnown RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 DHRS13Q6UX07 377 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 CAPN12Q6ZSI9 719 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 ZNF438Q7Z4V0 828 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 GALNT7Q86SF2 657 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 RELL1Q8IUW5 271 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 KRT222Q8N1A0 295 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 LKAAEAR1Q8TD35 194 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 TMEM159Q96B96 161 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 SH3KBP1Q96B97 665 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 INSM2Q96T92 566 aaPredicted RBP11.7□□□□□ -0.54
VPS13D-204ENST00000469054 FMO2Q99518 471 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 CCDC3Q9BQI4 270 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 WWP1Q9H0M0 922 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 ABCG4Q9H172 646 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 OR52A5Q9H2C5 316 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 LRRC4CQ9HCJ2 640 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 RABGEF1Q9UJ41 708 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 PSMD13Q9UNM6 376 aa11.7□□□□□ -0.54
VPS13D-204ENST00000469054 WDR87Q6ZQQ6 2873 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 IFRD1O00458 451 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-204ENST00000469054 KPNA5O15131 536 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 ZW10O43264 779 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 OPA1O60313 960 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 GPC4O75487 556 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 AHSGP02765 367 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 SLC35G4P0C7Q5 338 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CHRM3P20309 590 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 AOAHP28039 575 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 GABRB3P28472 473 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 GPR3P46089 330 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 PREPP48147 710 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CD151P48509 253 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 GPX6P59796 221 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 BOP1Q14137 746 aaKnown RBP11.69□□□□□ -0.54
VPS13D-204ENST00000469054 NR1D2Q14995 579 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 BRD3Q15059 726 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 TEX35Q5T0J7 233 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 ZNF549Q6P9A3 640 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CNSTQ6PJW8 725 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 NAPRTQ6XQN6 538 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 OTOAQ7RTW8 1153 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 TRIM48Q8IWZ4 208 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 Q8N9G6 341 aaPredicted RBP11.69□□□□□ -0.54
VPS13D-204ENST00000469054 ASZ1Q8WWH4 475 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CXorf40BQ96DE9 158 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 RMDN2Q96LZ7 410 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 C12orf66Q96MD2 445 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 SLC38A3Q99624 504 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CCDC68Q9H2F9 335 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 LRRN3Q9H3W5 708 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 POT1Q9NUX5 634 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 ZFATQ9P243 1243 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 NFU1Q9UMS0 254 aa11.69□□□□□ -0.54
VPS13D-204ENST00000469054 CFAP20Q9Y6A4 193 aaKnown RBP11.69□□□□□ -0.54
VPS13D-204ENST00000469054 PLXNB3Q9ULL4 1909 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 CNOT1A5YKK6 2376 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 PRAMEF33A0A0G2JMD5 474 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 A0A1W2PQM1 296 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 TCRBV9S1A1TA0A576 114 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 E5RI56 91 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 B4GAT1O43505 415 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 NIPSNAP2O75323 286 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SLU7O95391 586 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 APOA4P06727 396 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 MTHFD1P11586 935 aaKnown RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 ALDH4A1P30038 563 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 OR1D5P58170 312 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 TUBB4BP68371 445 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 CCL7P80098 99 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 INSM1Q01101 510 aaPredicted RBP11.68□□□□□ -0.54
VPS13D-204ENST00000469054 HSPA14Q0VDF9 509 aa11.68□□□□□ -0.54
VPS13D-204ENST00000469054 SYTL3Q4VX76 610 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms