RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 MR1Q95460 341 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 C12orf66Q96MD2 445 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 PPM1MQ96MI6 270 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 SLC25A23Q9BV35 468 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 ING2Q9H160 280 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 KLHL8Q9P2G9 620 aaPredicted RBP22.06■■□□□ 1.12
USP4-208ENST00000464168 SLC24A2Q9UI40 661 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 VPS4AQ9UN37 437 aa22.06■■□□□ 1.12
USP4-208ENST00000464168 TNRC6AQ8NDV7 1962 aaKnown RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 ARGFXA6NJG6 315 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 HLA-DPA1P20036 260 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 MSH3P20585 1137 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 COMTP21964 271 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 LPOP22079 712 aaPredicted RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 KPNA2P52292 529 aaKnown RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 NADK2Q4G0N4 442 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 IZUMO3Q5VZ72 239 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 PAPD7Q5XG87 772 aaKnown RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 KAZNQ674X7 775 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 FBXO38Q6PIJ6 1188 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 ZC3H18Q86VM9 953 aaKnown RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 OOSP2Q86WS3 158 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 EFCAB3Q8N7B9 438 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 OR2L2Q8NH16 312 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 CHST8Q9H2A9 424 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 KIR3DX1Q9H7L2 352 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 ACSS2Q9NR19 701 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 ZNHIT6Q9NWK9 470 aaKnown RBP22.05■■□□□ 1.12
USP4-208ENST00000464168 ACSL5Q9ULC5 683 aa22.05■■□□□ 1.12
USP4-208ENST00000464168 MYO9AB2RTY4 2548 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 STX7O15400 261 aaKnown RBP22.04■■□□□ 1.12
USP4-208ENST00000464168 AKT1P31749 480 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 TCEAL1Q15170 157 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 PLEKHS1Q5SXH7 462 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 PRAMEF17Q5VTA0 474 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 LCN10Q6JVE6 187 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 ARMC6Q6NXE6 501 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 SPOCD1Q6ZMY3 1216 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 CARFQ8N187 725 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 ADAMTS17Q8TE56 1095 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 CCDC42Q96M95 316 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 VAT1Q99536 393 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 NHEJ1Q9H9Q4 299 aaPredicted RBP22.04■■□□□ 1.12
USP4-208ENST00000464168 LATS2Q9NRM7 1088 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 BTRCQ9Y297 605 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 MAP4K5Q9Y4K4 846 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 ARL5AQ9Y689 179 aa22.04■■□□□ 1.12
USP4-208ENST00000464168 SPTBP11277 2137 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 SPOPO43791 374 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 PRAMEF1O95521 474 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 TPM3P06753 285 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 PTGIRP43119 386 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 ARCN1P48444 511 aaKnown RBP22.03■■□□□ 1.12
USP4-208ENST00000464168 MPP3Q13368 585 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 TRIM14Q14142 442 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 TMTC4Q5T4D3 741 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 HIST2H2BCQ6DN03 193 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 P3H4Q92791 437 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 LRFN5Q96NI6 719 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 FAM8A1Q9UBU6 413 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 SEC16AO15027 2179 aa22.03■■□□□ 1.12
USP4-208ENST00000464168 ITPR2Q14571 2701 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 KLHL33A6NCF5 533 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 MEN1O00255 615 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 SGTAO43765 313 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 CEACAM4O75871 244 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 SORBS2O94875 1100 aaKnown RBP22.02■■□□□ 1.12
USP4-208ENST00000464168 AGFG2O95081 481 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 AGTP01019 485 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 KLK3P07288 261 aaPredicted RBP22.02■■□□□ 1.12
USP4-208ENST00000464168 POLR2CP19387 275 aaPredicted RBP22.02■■□□□ 1.12
USP4-208ENST00000464168 BCL7AQ4VC05 210 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 FHL5Q5TD97 284 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 LILRA3Q8N6C8 439 aaPredicted RBP22.02■■□□□ 1.12
USP4-208ENST00000464168 OR4E2Q8NGC2 313 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 RMDN2Q96LZ7 410 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 QKIQ96PU8 341 aaKnown RBP eCLIP22.02■■□□□ 1.12
USP4-208ENST00000464168 TLR10Q9BXR5 811 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 ABHD10Q9NUJ1 306 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 SOHLH2Q9NX45 425 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 TRHDEQ9UKU6 1024 aa22.02■■□□□ 1.12
USP4-208ENST00000464168 SLC9B1P1A6NJY1 282 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 DDX3YO15523 660 aaKnown RBP22.01■■□□□ 1.11
USP4-208ENST00000464168 POLBP06746 335 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 RAB40ALP0C0E4 278 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 SLC35G4P0C7Q5 338 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 GSDMDP57764 484 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 ABRQ12979 859 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 TFDP3Q5H9I0 405 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 DAAM2Q86T65 1068 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 DSELQ8IZU8 1212 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 ENDOVQ8N8Q3 282 aaKnown RBP22.01■■□□□ 1.11
USP4-208ENST00000464168 HAUS1Q96CS2 278 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 LINC00615Q96LM1 132 aaPredicted RBP22.01■■□□□ 1.11
USP4-208ENST00000464168 FSD1LQ9BXM9 530 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 ASB8Q9H765 288 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 RSPH14Q9UHP6 348 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 POMT2Q9UKY4 750 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 INTUQ9ULD6 942 aa22.01■■□□□ 1.11
USP4-208ENST00000464168 COLEC10Q9Y6Z7 277 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms