RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ANXA5P08758 320 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 SLC2A4P14672 509 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 RPS3P23396 243 aaKnown RBP eCLIP13.43□□□□□ -0.261e-6■■□□□ 12.2
CLK3-203ENST00000454830 VIPR1P32241 457 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 PBX2P40425 430 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 WASP42768 502 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ABRQ12979 859 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 PRSS36Q5K4E3 855 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ZNF483Q8TF39 744 aaPredicted RBP13.43□□□□□ -0.26
CLK3-203ENST00000454830 PIF1Q9H611 641 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ELOVL2Q9NXB9 296 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ATG2BQ96BY7 2078 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 RB1P06400 928 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 CCR7P32248 378 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 DPP6P42658 865 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 MESP2Q0VG99 397 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 GRIN2CQ14957 1233 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 AP2M1Q96CW1 435 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ECHDC3Q96DC8 303 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 LMLNQ96KR4 655 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ATG10Q9H0Y0 220 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 ZFP14Q9HCL3 533 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 WASH3PC4AMC7 463 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 LZTS3O60299 673 aaPredicted RBP13.43□□□□□ -0.26
CLK3-203ENST00000454830 HOXA9P31269 272 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 FAM78AQ5JUQ0 283 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 CHSY3Q70JA7 882 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 RSPRY1Q96DX4 576 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 LRGUKQ96M69 825 aa13.43□□□□□ -0.26
CLK3-203ENST00000454830 MBD1Q9UIS9 605 aaPredicted RBP13.43□□□□□ -0.26
CLK3-203ENST00000454830 OBSL1O75147 1896 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 ATP1B2P14415 290 aaPredicted RBP13.42□□□□□ -0.26
CLK3-203ENST00000454830 IDO1P14902 403 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 EPB42P16452 691 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 FSHRP23945 695 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 NFYCQ13952 458 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 TIGD2Q4W5G0 525 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 MACC1Q6ZN28 852 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 DHDDSQ86SQ9 333 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 TRIM74Q86UV6 250 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 YAF2Q8IY57 180 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 DLG3Q92796 817 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 FGF13Q92913 245 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 ZNF225Q9UK10 706 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 TMCO1Q9UM00 188 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 RFXAPO00287 272 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 FBP2O00757 339 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 STK16O75716 305 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 NFATC1O95644 943 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 TIMP2P16035 220 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 ITPKAP23677 461 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 PSMA3P25788 255 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 MS4A2Q01362 244 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 HMGCLL1Q8TB92 370 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 DNAJB14Q8TBM8 379 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 NXPE3Q969Y0 559 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 PPWD1Q96BP3 646 aaKnown RBP13.42□□□□□ -0.26
CLK3-203ENST00000454830 SPAG4Q9NPE6 437 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 PTPRSQ13332 1948 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 A0A1W2PQ67 120 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 HEPACAM2A8MVW5 462 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 VPS4BO75351 444 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 CTSLP07711 333 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 RPL38P63173 70 aaKnown RBP13.42□□□□□ -0.26
CLK3-203ENST00000454830 HMGCS1Q01581 520 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 GRM2Q14416 872 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 ZNF805Q5CZA5 627 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 OSCP1Q8WVF1 389 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 MCCC1Q96RQ3 725 aaPredicted RBP13.42□□□□□ -0.26
CLK3-203ENST00000454830 LYSMD1Q96S90 227 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 ZNF382Q96SR6 550 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 COPS7BQ9H9Q2 264 aaPredicted RBP13.42□□□□□ -0.26
CLK3-203ENST00000454830 MCM8Q9UJA3 840 aa13.42□□□□□ -0.26
CLK3-203ENST00000454830 TRIM38O00635 465 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 DNAJA2O60884 412 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 MAP4P27816 1152 aaKnown RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 METAP1P53582 386 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 UFM1P61960 85 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 SHHQ15465 462 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 AP5B1Q2VPB7 878 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 NAIF1Q69YI7 327 aaPredicted RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 SPDL1Q96EA4 605 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 OARD1Q9Y530 152 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 POLR3HQ9Y535 204 aaPredicted RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 TRBV5-4A0A0C4DH59 114 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 WDR47O94967 919 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 B4GALNT1Q00973 533 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 SLC44A4Q53GD3 710 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 SULT1C3Q6IMI6 304 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 FUNDC1Q8IVP5 155 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 NPAS3Q8IXF0 933 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 CDC26Q8NHZ8 85 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 TMEM159Q96B96 161 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 NUSAP1Q9BXS6 441 aaKnown RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 SLC2A11Q9BYW1 496 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 RNF11Q9Y3C5 154 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 PRR23AA6NEV1 266 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 LOC730098B7Z3J9 87 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 PRRT4C9JH25 899 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 GPX3P22352 226 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms