RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SCN8AQ9UQD0 1980 aa17.71■□□□□ 0.43
SQSTM1-204ENST00000453046 KALRNO60229 2985 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 A6NCN8 305 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 EFCAB7A8K855 629 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 PDZK1P1A8MUH7 402 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 STMND1H3BQB6 276 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 CHUKO15111 745 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 EFSO43281 561 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 C1QL1O75973 258 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 ZNF7P17097 686 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 HLA-DPA1P20036 260 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 CHRNA4P43681 627 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 CLCNKAP51800 687 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 EPHA4P54764 986 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 SLC1A5Q15758 541 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 SEPT7Q16181 437 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 ATP13A5Q4VNC0 1218 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 ZDHHC20Q5W0Z9 365 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 WDR74Q6RFH5 385 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 TRMT10CQ7L0Y3 403 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 VASH2Q86V25 355 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 CAND1Q86VP6 1230 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 JPH3Q8WXH2 748 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 TTC9Q92623 222 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 LRRC39Q96DD0 335 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 MRGPRX2Q96LB1 330 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 VPS35Q96QK1 796 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 CASS4Q9NQ75 786 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 SLC39A1Q9NY26 324 aa17.7■□□□□ 0.42
SQSTM1-204ENST00000453046 VIPP01282 170 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 VCLP18206 1134 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 ADRA1AP35348 466 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 SPAM1P38567 509 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 TMEM115Q12893 351 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 SRSF6Q13247 344 aaKnown RBP17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 LY6DQ14210 128 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 DTX1Q86Y01 620 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 TRAPPC5Q8IUR0 188 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 BRSK1Q8TDC3 778 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 SGF29Q96ES7 293 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 TBL1YQ9BQ87 522 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 TIMM29Q9BSF4 260 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 TBC1D10AQ9BXI6 508 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 ASPSCR1Q9BZE9 553 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 EPB41L1Q9H4G0 881 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 SAYSD1Q9NPB0 183 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 OCIAD1Q9NX40 245 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 SLC23A2Q9UGH3 650 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 KLHL3Q9UH77 587 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 PKP3Q9Y446 797 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 PCDHGA3Q9Y5H0 932 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 ATMQ13315 3056 aa17.69■□□□□ 0.42
SQSTM1-204ENST00000453046 IDSP22304 550 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 ATP1A2P50993 1020 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 PMS2P54278 862 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 RAB15P59190 212 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 CDH17Q12864 832 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 PDIA2Q13087 525 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 BBS9Q3SYG4 887 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 FNBP1LQ5T0N5 605 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 DCAF12Q5T6F0 453 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 ARMC3Q5W041 872 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 FAM151BQ6UXP7 276 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 ZNF843Q8N446 348 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 TTC30BQ8N4P2 665 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 PWWP2AQ96N64 755 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 FICDQ9BVA6 458 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 DDA1Q9BW61 102 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 ZCCHC2Q9C0B9 1178 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 CDC42EP4Q9H3Q1 356 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 IL26Q9NPH9 171 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 IL17CQ9P0M4 197 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 PDP2Q9P2J9 529 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 B3GALT1Q9Y5Z6 326 aa17.68■□□□□ 0.42
SQSTM1-204ENST00000453046 GLYATL1P3A0A0U1RQE8 302 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 LILRA5A6NI73 299 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 B4E171 279 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 BUD23O43709 281 aaKnown RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 AMD1P17707 334 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 XRCC1P18887 633 aaPredicted RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 RPL10P27635 214 aaKnown RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 TSPAN7P41732 249 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 MAGEA4P43358 317 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 UBE2IP63279 158 aaKnown RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 ITGA9Q13797 1035 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 SPARCL1Q14515 664 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 CASP8Q14790 479 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 KHDC1Q4VXA5 237 aaKnown RBP17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 CCDC38Q502W7 563 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 HDXQ7Z353 690 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 ZNF605Q86T29 641 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 PLXDC1Q8IUK5 500 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 ZBED8Q8IZ13 594 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 IL22RA1Q8N6P7 574 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 PMEPA1Q969W9 287 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 CXorf40BQ96DE9 158 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 ARHGAP9Q9BRR9 750 aa17.67■□□□□ 0.42
SQSTM1-204ENST00000453046 SCHIP1Q9P0W5 487 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms