RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CWC15Q9P013 229 aaKnown RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 COPG2Q9UBF2 871 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TUBE1Q9UJT0 475 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ERVK-11Q9UQG0 969 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 CCDC171Q6TFL3 1326 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 CPDO75976 1380 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ALS2Q96Q42 1657 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 MRC1P22897 1456 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 OBSCNQ5VST9 7968 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 A0A0D9SFI3 127 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 A0A0U1RQF3 1178 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 EME2A4GXA9 379 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 PI4K2BG5E9Z4 385 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 OGG1O15527 345 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 SLC7A4O43246 635 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 STX6O43752 255 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 DAB1O75553 588 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 RGS11O94810 467 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 BAG2O95816 211 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 FTCDO95954 541 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 WNT1P04628 370 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 MMP2P08253 660 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 PSMA5P28066 241 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 ACADLP28330 430 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 GJB2P29033 226 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TLX1P31314 330 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 MC5RP33032 325 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 PGGT1BP53609 377 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 GRSF1Q12849 480 aaKnown RBP eCLIP4.12□□□□□ -1.75
VPS29-202ENST00000447578 IL11RAQ14626 422 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TNIP1Q15025 636 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 SNAPC1Q16533 368 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 C2orf68Q2NKX9 166 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 RABL6Q3YEC7 729 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 CCDC92Q53HC0 331 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 ODF2Q5BJF6 829 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 SLC10A5Q5PT55 438 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 RARS2Q5T160 578 aaKnown RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 C6orf163Q5TEZ5 329 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 ISM2Q6H9L7 571 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 BLOC1S2Q6QNY1 142 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TAOK1Q7L7X3 1001 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 CAMKMTQ7Z624 323 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 GLRX5Q86SX6 157 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 EPHX4Q8IUS5 362 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 DENND6AQ8IWF6 608 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 CEP57L1Q8IYX8 460 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 HORMAD2Q8N7B1 307 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 NECAB1Q8N987 351 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TC2NQ8N9U0 490 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 BEST2Q8NFU1 509 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 OIT3Q8WWZ8 545 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 NEUROG1Q92886 237 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 SNAPC3Q92966 411 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 SYAP1Q96A49 352 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 MIB2Q96AX9 1013 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 ZNF333Q96JL9 665 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 CLMNQ96JQ2 1002 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TM6SF1Q9BZW5 370 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 LHPPQ9H008 270 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 MMP27Q9H306 513 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 TSPY26PQ9H489 355 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 GPR108Q9NPR9 543 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 THSD1Q9NS62 852 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 CWC25Q9NXE8 425 aaPredicted RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 ANKRD10Q9NXR5 420 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 HAO2Q9NYQ3 351 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 MTRRQ9UBK8 725 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 DBNLQ9UJU6 430 aaKnown RBP4.12□□□□□ -1.75
VPS29-202ENST00000447578 SLC4A4Q9Y6R1 1079 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 PCDH11XQ9BZA7 1347 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 PCDH11YQ9BZA8 1340 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 ADAMTS7Q9UKP4 1686 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 PLEKHG2Q9H7P9 1386 aa4.12□□□□□ -1.75
VPS29-202ENST00000447578 ABCC6O95255 1503 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 C5P01031 1676 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 A0A1W2PR77 199 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ARHGEF37A1IGU5 675 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 VPS37CA5D8V6 355 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 TNFRSF13BO14836 293 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 PRPF4O43172 522 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS29-202ENST00000447578 BCL10O95999 233 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ENO3P13929 434 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 SYT1P21579 422 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 SP100P23497 879 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 RAB28P51157 221 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 TMPRSS3P57727 454 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 MRPS34P82930 218 aaKnown RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 ECT2LQ008S8 904 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ST3GAL1Q11201 340 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 RALGDSQ12967 914 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 LPIN1Q14693 890 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 SMTNL2Q2TAL5 461 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 HIST2H2BCQ6DN03 193 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 HIST2H2BDQ6DRA6 164 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 TRAT1Q6PIZ9 186 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 LINGO2Q7L985 606 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ADCK2Q7Z695 626 aa4.11□□□□□ -1.75
VPS29-202ENST00000447578 ZNF589Q86UQ0 364 aaPredicted RBP4.11□□□□□ -1.75
VPS29-202ENST00000447578 IQCHQ86VS3 1027 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms