RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CDKN2AIPNLQ96HQ2 116 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 SLC41A2Q96JW4 573 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 TRIT1Q9H3H1 467 aaKnown RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 STARD5Q9NSY2 213 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 NLE1Q9NVX2 485 aaPredicted RBP20.26■□□□□ 0.83
SDC1-205ENST00000447124 SLC24A2Q9UI40 661 aa20.26■□□□□ 0.83
SDC1-205ENST00000447124 ZNF106Q9H2Y7 1883 aaKnown RBP20.25■□□□□ 0.83
SDC1-205ENST00000447124 IGLV3-16A0A075B6K0 115 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 ZNF891A8MT65 544 aaPredicted RBP20.25■□□□□ 0.83
SDC1-205ENST00000447124 H7C0S8 307 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 SPAG6O75602 509 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 PSMA3P25788 255 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 STAT5AP42229 794 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 PRLHRP49683 370 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 MAP7Q14244 749 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 KCNAB1Q14722 419 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 POU6F1Q14863 301 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 GPR33Q49SQ1 333 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 SERPINA9Q86WD7 417 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 PIANPQ8IYJ0 282 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 GALNT6Q8NCL4 622 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 ZFPM2Q8WW38 1151 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 ULBP3Q9BZM4 244 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 LRRC40Q9H9A6 602 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 HRASLS2Q9NWW9 162 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 ZDHHC3Q9NYG2 299 aa20.25■□□□□ 0.83
SDC1-205ENST00000447124 C17orf113A0A1B0GUU1 675 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 KLHL33A6NCF5 533 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 OR5K3A6NET4 321 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 KIAA0754O94854 1291 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 TIAF1O95411 115 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 AP2A1O95782 977 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 RALBP11234 206 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 NFKB2Q00653 900 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 PLCL1Q15111 1095 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 OASLQ15646 514 aaKnown RBP20.24■□□□□ 0.83
SDC1-205ENST00000447124 ZRANB3Q5FWF4 1079 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 C6orf15Q6UXA7 325 aaPredicted RBP20.24■□□□□ 0.83
SDC1-205ENST00000447124 TXLNBQ8N3L3 684 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 ESX1Q8N693 406 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 HEXDCQ8WVB3 486 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 UBXN4Q92575 508 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 KIAA1143Q96AT1 154 aaPredicted RBP20.24■□□□□ 0.83
SDC1-205ENST00000447124 PPM1MQ96MI6 270 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 NRTNQ99748 197 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 GEMIN8Q9NWZ8 242 aaKnown RBP20.24■□□□□ 0.83
SDC1-205ENST00000447124 MRPS18BQ9Y676 258 aaKnown RBP20.24■□□□□ 0.83
SDC1-205ENST00000447124 RPS6KL1Q9Y6S9 549 aa20.24■□□□□ 0.83
SDC1-205ENST00000447124 CCDC78A2IDD5 438 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 OR6C74A6NCV1 312 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 GOLGA6L3A6NEY3 463 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 MROH6A6NGR9 719 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 PYCARD-AS1I3L0S3 204 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 J3QKU1 62 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 TERTO14746 1132 aaKnown RBP20.23■□□□□ 0.83
SDC1-205ENST00000447124 PSMD3O43242 534 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 PRKAR1AP10644 381 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 ACRV1P26436 265 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 PDHA2P29803 388 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.23■□□□□ 0.83
SDC1-205ENST00000447124 ATP1A1-AS1Q5TC04 95 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 KLHL35Q6PF15 583 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 BORAQ6PGQ7 559 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 FBXO38Q6PIJ6 1188 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 TAS2R42Q7RTR8 314 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 PRUNE1Q86TP1 453 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 RASGRP3Q8IV61 690 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 CLDN19Q8N6F1 224 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 OR52K1Q8NGK4 314 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 HM13Q8TCT9 377 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 STYXQ8WUJ0 223 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 CCM2Q9BSQ5 444 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 EFHD1Q9BUP0 239 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 KIR3DX1Q9H7L2 352 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 ETNK1Q9HBU6 452 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 GUCA1BQ9UMX6 200 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 PRSS21Q9Y6M0 314 aa20.23■□□□□ 0.83
SDC1-205ENST00000447124 CFAP99D6REC4 459 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 LIASO43766 372 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 SLC35G4P0C7Q5 338 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 EBLN1P0CF75 366 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 ETS1P14921 441 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 OAS2P29728 719 aaKnown RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 STIP1P31948 543 aaKnown RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 GRIA1P42261 906 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 ARCN1P48444 511 aaKnown RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 SEPT6Q14141 434 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 GSE1Q14687 1217 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 DBN1Q16643 649 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 P3H1Q32P28 736 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 PPP1R3BQ86XI6 285 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 SLC13A5Q86YT5 568 aaPredicted RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 SIDT2Q8NBJ9 832 aaKnown RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 PHC3Q8NDX5 983 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 OR4E2Q8NGC2 313 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 LRRC45Q96CN5 670 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 OR52A5Q9H2C5 316 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 COG4Q9H9E3 785 aa20.22■□□□□ 0.83
SDC1-205ENST00000447124 AKIRIN1Q9H9L7 192 aaPredicted RBP20.22■□□□□ 0.83
SDC1-205ENST00000447124 CROTQ9UKG9 612 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms