RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CATSPER2Q96P56 530 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 VPS35Q96QK1 796 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 C1QTNF3Q9BXJ4 246 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 SERGEFQ9UGK8 458 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 ZNF225Q9UK10 706 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 CNOT6Q9ULM6 557 aaKnown RBP20.75■□□□□ 0.91
PTPRF-207ENST00000436724 OARD1Q9Y530 152 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 LRRC42Q9Y546 428 aa20.75■□□□□ 0.91
PTPRF-207ENST00000436724 KIAA1211LQ6NV74 962 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 CLYBLQ8N0X4 340 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 C3orf30Q96M34 536 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 NECTIN4Q96NY8 510 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 ASB2Q96Q27 587 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 HGH1Q9BTY7 390 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 HDAC8Q9BY41 377 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 MEAF6Q9HAF1 191 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 FADS3Q9Y5Q0 445 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 CKAP5Q14008 2032 aa20.74■□□□□ 0.91
PTPRF-207ENST00000436724 H0Y3Z8 333 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 RAD51BO15315 384 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 TMEM115Q12893 351 aaPredicted RBP20.73■□□□□ 0.91
PTPRF-207ENST00000436724 TBCCQ15814 346 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CST6Q15828 149 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CYP2U1Q7Z449 544 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 KIRREL3Q8IZU9 778 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 AFAP1L2Q8N4X5 818 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 ELMO1Q92556 727 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 FAR2Q96K12 515 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 EGFL8Q99944 293 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 LOC100653049A0A140TA62 436 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 B2RBV5 119 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 SPECC1L-ADORA2AF8WAN1 911 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 AZIN1O14977 448 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 TAPBPO15533 448 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 KRT34O76011 436 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CTHP32929 405 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CAMK2GQ13555 558 aaPredicted RBP20.73■□□□□ 0.91
PTPRF-207ENST00000436724 LDLRAP1Q5SW96 308 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 RAET1GQ6H3X3 334 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.73■□□□□ 0.91
PTPRF-207ENST00000436724 OR52B6Q8NGF0 335 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CDK15Q96Q40 435 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CCDC28BQ9BUN5 200 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 RSPH9Q9H1X1 276 aaPredicted RBP20.73■□□□□ 0.91
PTPRF-207ENST00000436724 DCLRE1BQ9H816 532 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 CD207Q9UJ71 328 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 TIMM22Q9Y584 194 aa20.73■□□□□ 0.91
PTPRF-207ENST00000436724 KRT87PA6NCN2 255 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 GRXCR2A6NFK2 248 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 MEI4A8MW99 385 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TSPAN6O43657 245 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 FGF4P08620 206 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 CBSLP0DN79 551 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 CBSP35520 551 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 GDF5P43026 501 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 HSPA7P48741 367 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TAS2R38P59533 333 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 KLF10Q13118 480 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 GBX1Q14549 363 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 RBBP7Q16576 425 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TMEM52BQ4KMG9 183 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 IER5LQ5T953 404 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 FAM46CQ5VWP2 391 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 SYVN1Q86TM6 617 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 RAVER1Q8IY67 606 aaKnown RBP20.72■□□□□ 0.91
PTPRF-207ENST00000436724 LILRA3Q8N6C8 439 aaPredicted RBP20.72■□□□□ 0.91
PTPRF-207ENST00000436724 PDPRQ8NCN5 879 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 HEBP1Q9NRV9 189 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 C2CD4DB7Z1M9 353 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 S100BP04271 92 aaPredicted RBP20.72■□□□□ 0.91
PTPRF-207ENST00000436724 VCLP18206 1134 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 PON2Q15165 354 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 AGBL4Q5VU57 503 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 KANK2Q63ZY3 851 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 PHYKPLQ8IUZ5 450 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TEX9Q8N6V9 391 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 RBM15BQ8NDT2 890 aaKnown RBP20.72■□□□□ 0.91
PTPRF-207ENST00000436724 CEP70Q8NHQ1 597 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 CXorf40AQ8TE69 158 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TWIST2Q8WVJ9 160 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 C19orf60Q96EN9 201 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 SLC6A17Q9H1V8 727 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TUBB1Q9H4B7 451 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 KLHL42Q9P2K6 505 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 PTBP2Q9UKA9 531 aaKnown RBP20.72■□□□□ 0.91
PTPRF-207ENST00000436724 TMCO1Q9UM00 188 aa20.72■□□□□ 0.91
PTPRF-207ENST00000436724 DOCK9Q9BZ29 2069 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 SYNCRIPO60506 623 aaKnown RBP20.71■□□□□ 0.91
PTPRF-207ENST00000436724 EGFP01133 1207 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 LMNAP02545 664 aaKnown RBP20.71■□□□□ 0.91
PTPRF-207ENST00000436724 TNFRSF4P43489 277 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 GPR1P46091 355 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 INHBCP55103 352 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 CRY1Q16526 586 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 ANKRD27Q96NW4 1050 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 MKRN2Q9H000 416 aaKnown RBP20.71■□□□□ 0.91
PTPRF-207ENST00000436724 ZNF385DQ9H6B1 395 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 NOL11Q9H8H0 719 aaKnown RBP20.71■□□□□ 0.91
PTPRF-207ENST00000436724 BTRCQ9Y297 605 aa20.71■□□□□ 0.91
PTPRF-207ENST00000436724 A0A1W2PP55 124 aa20.7■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms